Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00009 ATGGATTCCTCGCCGACCAACAATACCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTTTGTTTTCAGAGTGTGGATCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTCAAATCCCATGTTTCTCAAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCTGATCACACTCCTCGATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGGATCTACAGGGGAAGAATGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGACAATGAGACAGATGTTGAAAGTTCACCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAGCCAAGAATTGGAGGACATGGAAGCAGCAATGGCAGTGGCCAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCCTTCATGGACATTCAAACCGAAACAAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCAAGAGCTGTTGGAAAACATAATTCTACAGTATCCAACACATAG 999 0.4344 MDSSPTNNTTLLTNLLLFNNTVQPELMRSLHVYRQGDEEERAVEREFLFSECGSYVEMQATPILKFVKSHVSQVFQGYKNGVWLCIFAFHADHTPRFCRIPPLLLVSRNPKLQMVPNLLHDLHVIYKLDRKEEDKDTTLGSTGEECQGNSNNFQPSEKVFPVLDQDLNYLPYEEDESELLDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKSQELEDMEAAMAVAKRQRMLECEKENIEKKPFMDIQTETKRFRQDVFKRRHRARAVGKHNSTVSNT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00009 332 MobiDBLite consensus disorder prediction 176 195 - -
Vium4362g00009 332 Coils Coil 251 283 - -
Vium4362g00009 332 PANTHER PROTEIN RKD4 165 327 IPR044607 GO:0003700
Vium4362g00009 332 Pfam RWP-RK domain 207 254 IPR003035 -
Vium4362g00009 332 ProSiteProfiles RWP-RK domain profile. 189 274 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00009 Vium-Chr4362 44413 49615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00009 22 332 AtRKD Transcription Factor Family AT4G35590 47.706 3.98e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium4362g00009 RWP-RK 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00009 - - gmx:113001653 552.747