Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4362g00008 ATGGATTCCTCGCCGACCAACAATACCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTTTGTTTTCAGAGTGTGGATCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTCAAATCCCATGTTTCTCAAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCGTTTCATGCTGATCACACTCCTCGATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGGATCTACAGGGGAAGAATGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGACAATGAGACAGATGTTGAAAGTTCACCAGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGCAACATTGACTGATTGA 804 0.4341 MDSSPTNNTTLLTNLLLFNNTVQPELMRSLHVYRQGDEEERAVEREFLFSECGSYVEMQATPILKFVKSHVSQVFQGYKNGVWLCIFAFHADHTPRFCRIPPLLLVSRNPKLQMVPNLLHDLHVIYKLDRKEEDKDTTLGSTGEECQGNSNNFQPSEKVFPVLDQDLNYLPYEEDESELLDNETDVESSPGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQATLTD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4362g00008 267 ProSiteProfiles RWP-RK domain profile. 189 267 IPR003035 -
Vium4362g00008 267 Pfam RWP-RK domain 207 254 IPR003035 -
Vium4362g00008 267 PANTHER PROTEIN RKD4 162 260 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4362g00008 Vium-Chr4362 44412 49321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4362g00008 22 262 AtRKD Transcription Factor Family AT4G35590 46.094 8.72e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium4362g00008 RWP-RK 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4362g00008 - - gmx:113001653 428.713