Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4356g00004 ATGAGTACAGAAAAAACCGACGTCAACGATGGTTCTTCTTCTCCATCACCTAAGAAAGATAAAACCAAACAAAATATTCATCAAGACAAGGATTCACCTCCATCAACAAACTCTTCTGATTCATATTCAGTTTCTCCTGATTCAGATTCTCCGGATTCCAAAGATTCTCCGGATGCCAAAGATTCTCCGGATTCGAAAGATTCCCCGAATTCAGATTCTCCGGATTCGAAAGATTCCCCGAATTCAGATTCTCCGGATTCAGATTCTCCGGATTCCAAAGATTCTCCGGATTCCAAAGATTCTCCGAATTCAGATTCTCCGAATTCAGATTCTCCGAATTCAGATTCTCCGAATTCAGATTCTCCGAATTCAGATTCTCCGGATTCGGATTCTCCAAAGAGTCATCCGTCTAAGTCACCACCGTCTCCGCCACCTCCATCCAAAACTTCATCCCCATCTTCATCGCCTTCGCCGTCATCTAAAGGTTTAAGTCCATCACCACCATCACCGTCATCTAAAGATTCAAGTCCATCACAACCACGACCGTCATCTGAAGATTCAAATCCATCATCACAATCTCAGTCATCTAAAGATTCAAGTCCATCTCCGCCCCTTCAATTGTTAGCATCGCCTCCACCACCCTCGCCATCGCCCTCTTCACCACCACCAAGTTCGCCTCCACATTCCCCGCCACCCCCTTCGCGCCAACAGTCACCCCCACCACCTCCGCGTCCGCGTTCCTTGCCATCCCCTTTGCCCCAACCTTCCCTGCCACCCCCTGCGCCCCAACCTTCCCCGCCTCCCCCATTGCTCCCACCCTGGTCACCGCCACCAAATCGACTGCCAGAGCAAAATGACAATTCTTCCCCGCCACCACCATCAACACAGTTCCATGCTCCACCTCCCCTTTCTTGGCAAACTGCAGTCATGAATGATTCAAAAGGGGGAACTTCTAGGAATTCAAATTCAACAGGATCAAGCCCCCCGATCAATCATGACGTTAGTTCCGAAGCAAACTCAACGGTTTCTTCTCTCGCCCCCTCTTCCAGTGATAATTCAGAAAAATATGTTGCCTATACAGTCGCCGGACTTTTAGCTGTTGCCTTGGTTGCTATAGCTGTAGCTATTGCTTTGGCGTTTAAGAGGAAGAAATCGAGTGATGATTCTAACGATGCACCCTACATGCCGCCCCTTGATATTCAAGTCAAATCAGGTGCTAATGGGCATTACTATGTACAGCAGCCTTCCCTTGCAAACAACTATTCAAATGGGAATGCGAAAGTGAACCATTTTGGATCTTCTTTAGACTCGGCTCAGCCCACGAATGGTCCCATGATTTTCACCTATGACATGGTTATGGAAATAACAAACGCATTTTCTAGTAAAAATGTTATAGGGGAAGGAGGCTTTGGATGTGTTTACAAAGGTTGCCTGCCAGATGGAAAAATAGTTGCAGTAAAGCAGCTTAGGGCTGGCAGTGGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGATATCATTAGCCGAGTACATCATCGATATTTGGTGTCATTAGTTGGTTATTGCGTGTCTGAACAGCAAAGAATTCTTATCTATCAATATGTTCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGTCAAAAGGCTAAAGATTGCAATAGGCGCTGCTAAGGGCCTTGCATATCTTCACGAGGACTGCAGCCAAAAGATAATTCACCGAGATATTAAGTCAGCAAACATACTCTTGGATGATGCTTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCTAGGCTAGCTGATGCTGCCAATAGCCACGTATCAACTAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAATATGCAACAAGTGGAAAATTAACAGACAGATCAGATGTTTACTCATTTGGGGTTGTCCTCCTTGAGCTTGTTACAGGAAGGAAACCCGTTGATCAAACTCGGCCAATTGGAGATGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATGGAGACACGTAATTTTAGTGAATTAGTAGATCCAAGACTTGAAAAACACTTTGTGGAGAGTGAAATGTCCAGAATGGTTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTTTCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAAAATGTGATCTTTCTAATGGGGTGAAATATGGTCAGAGCACAGTTTATGATTCTGGCCAATATGATAAAGATATAATGGTATTCAGAAGAATGGCGAATGGCACCTTTTTTGATTCTGATTTTAATACGTATAATAGTGAATATAGTCTTTCAAAACAGACGTCGGGAGGGTCCGAGCAAAACTTGATGCAGCTTAGTTCTAGTGACGAATCAGACTCTACAGCTATCAACTGGAATATGAACAGTCCTGAATTAAAACGGTGA 2475 0.4541 MSTEKTDVNDGSSSPSPKKDKTKQNIHQDKDSPPSTNSSDSYSVSPDSDSPDSKDSPDAKDSPDSKDSPNSDSPDSKDSPNSDSPDSDSPDSKDSPDSKDSPNSDSPNSDSPNSDSPNSDSPNSDSPDSDSPKSHPSKSPPSPPPPSKTSSPSSSPSPSSKGLSPSPPSPSSKDSSPSQPRPSSEDSNPSSQSQSSKDSSPSPPLQLLASPPPPSPSPSSPPPSSPPHSPPPPSRQQSPPPPPRPRSLPSPLPQPSLPPPAPQPSPPPPLLPPWSPPPNRLPEQNDNSSPPPPSTQFHAPPPLSWQTAVMNDSKGGTSRNSNSTGSSPPINHDVSSEANSTVSSLAPSSSDNSEKYVAYTVAGLLAVALVAIAVAIALAFKRKKSSDDSNDAPYMPPLDIQVKSGANGHYYVQQPSLANNYSNGNAKVNHFGSSLDSAQPTNGPMIFTYDMVMEITNAFSSKNVIGEGGFGCVYKGCLPDGKIVAVKQLRAGSGQGEREFKAEVDIISRVHHRYLVSLVGYCVSEQQRILIYQYVPNGTLHHHLHGSGMPVLDWVKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAKVADFGLARLADAANSHVSTRVMGTFGYMAPEYATSGKLTDRSDVYSFGVVLLELVTGRKPVDQTRPIGDESLVEWARPLLLRAMETRNFSELVDPRLEKHFVESEMSRMVEAAAACVRHSAPKRPRMFQVVRALDTGDEKCDLSNGVKYGQSTVYDSGQYDKDIMVFRRMANGTFFDSDFNTYNSEYSLSKQTSGGSEQNLMQLSSSDESDSTAINWNMNSPELKR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4356g00004 824 MobiDBLite consensus disorder prediction 300 351 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 14 28 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 161 175 - -
Vium4356g00004 824 Gene3D Phosphorylase Kinase; domain 1 423 534 - -
Vium4356g00004 824 SUPERFAMILY Protein kinase-like (PK-like) 435 732 IPR011009 -
Vium4356g00004 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Vium4356g00004 824 ProSiteProfiles Protein kinase domain profile. 459 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4356g00004 824 FunFam proline-rich receptor-like protein kinase PERK8 535 747 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 134 152 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 176 204 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 101 133 - -
Vium4356g00004 824 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 365 784 IPR047117 -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 29 50 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 51 100 - -
Vium4356g00004 824 FunFam Proline-rich receptor-like protein kinase PERK8 432 534 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 786 824 - -
Vium4356g00004 824 Gene3D Transferase(Phosphotransferase) domain 1 535 750 - -
Vium4356g00004 824 MobiDBLite consensus disorder prediction 205 299 - -
Vium4356g00004 824 CDD STKc_IRAK 465 733 - -
Vium4356g00004 824 ProSitePatterns Protein kinases ATP-binding region signature. 465 487 IPR017441 GO:0005524
Vium4356g00004 824 MobiDBLite consensus disorder prediction 1 351 - -
Vium4356g00004 824 Pfam Protein tyrosine and serine/threonine kinase 462 732 IPR001245 GO:0004672|GO:0006468
Vium4356g00004 824 SMART serkin_6 459 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4356g00004 Vium-Chr4356 60001 66199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4356g00004 358 793 Trihelix Transcription Factor Family AT1G70460 60.177 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium4356g00004 PK_Tyr_Ser-Thr 3.2e-47 CL0016