Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4356g00003 ATGAGAGGTCTTGGTGTAGTAGAGTGGCTTAGACCCCTTGTAGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAACATTTGTGTGGAGTCCAAAGAGGAAAAGGGTGAAGAATGCCACTTAGCTCCCATTTGCAGGGATAAATATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAAGTTGCCATATCACAACAATCAAGATGGCTTAACAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAGAAACTGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTGAAGCAAGAGGCCATATCTGCACAGAGCTATACCAGTCTGAACATCATTGAACATCTGCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAGCAACTTTAACTCCAAGTGTCCATCAGCCTGCAACAAAACAGTGCAACTCACATCCTAGCATTGAAGGACCCCCAAGCGGTTCTAATCCTTCCACTGAAGAACCATCGTTTGATTCAAAATTTGTTGGTTTGATTCCAGACGAATGTCTTAAACAATCAACTAAAATGTCTCCCATCTCCAAAACTAAAATGCCCAAGTACAGTAAAACTTCAGGGAAGCAACAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAAGGTACCAAGCTAAAAATCTTGTCACTGAGAGAAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGATGCAGTTGACTATATAAAGGAATTACAAGCACAAGTGAATGAACTAAAAAACGAAGGCAGTGCTTTGGAAGTTCAGGACTGTGTGAACACACCAAAATTGAGGAAGACAGCTGACAAAGAACAAGAAGGAACCAGAAGTAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAAGTACAAGCAGAAGTGCACTACATTGGCAAGAAAGATTTCTTAATTAAATTATACTGTGAGCAGAAGCAAGGTAAATTCTCAAAGTTGATAGAATCTATACACTCAATTGGACTTCAGGTGACTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACGGTTAAGGCAACCAAGAAGGATATTCACCCCACTAAACTGAAAGAGTATTTAATACAAAAGACAAGTGATGATAGACAAAGTAGGTAA 1437 0.4036 MRGLGVVEWLRPLVETNVWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNICVESKEEKGEECHLAPICRDKYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLNKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSATLTPSVHQPATKQCNSHPSIEGPPSGSNPSTEEPSFDSKFVGLIPDECLKQSTKMSPISKTKMPKYSKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKERYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVNELKNEGSALEVQDCVNTPKLRKTADKEQEGTRSNTLNQSSSDCTKKMQMEVQAEVHYIGKKDFLIKLYCEQKQGKFSKLIESIHSIGLQVTSANMTTFDDKVLNILTVKATKKDIHPTKLKEYLIQKTSDDRQSR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4356g00003 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Vium4356g00003 478 MobiDBLite consensus disorder prediction 195 225 - -
Vium4356g00003 478 Gene3D - 280 356 IPR036638 GO:0046983
Vium4356g00003 478 MobiDBLite consensus disorder prediction 243 268 - -
Vium4356g00003 478 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Vium4356g00003 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 355 IPR036638 GO:0046983
Vium4356g00003 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Vium4356g00003 478 SMART finulus 295 344 IPR011598 GO:0046983
Vium4356g00003 478 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 197 469 - -
Vium4356g00003 478 MobiDBLite consensus disorder prediction 363 385 - -
Vium4356g00003 478 MobiDBLite consensus disorder prediction 243 289 - -
Vium4356g00003 478 MobiDBLite consensus disorder prediction 269 289 - -
Vium4356g00003 478 Coils Coil 328 355 - -
Vium4356g00003 478 MobiDBLite consensus disorder prediction 195 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4356g00003 Vium-Chr4356 56599 59819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4356g00003 6 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 30.799 8.19e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4356g00003 bHLH-MYC_N 7.8e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4356g00003 - - gmx:100807261 748.043