Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4353g00002 ATGGGGTCCCAGCCCAAGCCCAAACCCAATAAGGCCCTACAGCAGCCCGCAGCTCAACCTCTTCCCTCTGCATCGGAGCACCATGGAACATGCAGGAGGAGCAGAACGTGGGCTTCTGCTCTTCAGCGCGGAGGGCGGGGCAACGCTGACGGGGCTGCTAGAGGAGGATTCGATGTCGCCGTCCTCGGCGACTACAGAGGGGTCGCTGTCGGCGCGTACGTGTCCGGAGGAGGACGCCGGGAATTGGCTAGTGAGGAAGGCGATGCGGCGGAGGGAGAGCGAGGAGGGGAGCGAGGAACGGTGGGTGTGCTATTCGGAGGTGGTGGAGGAGAAGAAGGAGACATGGAGGAGGTGACGAGTTATTGCATGGCGACGACAACGTCCTTTGGATTGTTGTCCTTGAAGCTGGATCACCAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCGCTATACGTCGCGGGGGATGGAGGTCCACACATTGTCCCTGACTTCCTCAATGGTTTCCTCCTTCATAATGCGTTCCTCCCCCATGTTGCATGGGATGGTTGGGGGAATGGTGTGGTTGGGAACACATGGAATGTTACTGAAGATTGTGGGGGTAACAAGACGAATGTGAAGGAAGAAAACGGTTGGAAGTTGGGGCAGAGAGAGGCAAGTGTTCAGAGATACAAAGAGAAGAGGCAAAGCCGACTCTTCTCCAAGAAGATCCGTTATGAAGTTCGCAAGCTCAATGCTGAGAAACGGCCCAGGATGAAGGGACGATTTGTGAAGAGGGAATGA 783 0.5581 MGSQPKPKPNKALQQPAAQPLPSASEHHGTCRRSRTWASALQRGGRGNADGAARGGFDVAVLGDYRGVAVGAYVSGGGRRELASEEGDAAEGERGGERGTVGVLFGGGGGEEGDMEEVTSYCMATTTSFGLLSLKLDHQGILNAWSDKGSLYVAGDGGPHIVPDFLNGFLLHNAFLPHVAWDGWGNGVVGNTWNVTEDCGGNKTNVKEENGWKLGQREASVQRYKEKRQSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4353g00002 260 ProSiteProfiles CCT domain profile. 217 259 IPR010402 GO:0005515
Vium4353g00002 260 MobiDBLite consensus disorder prediction 1 21 - -
Vium4353g00002 260 MobiDBLite consensus disorder prediction 81 95 - -
Vium4353g00002 260 MobiDBLite consensus disorder prediction 80 112 - -
Vium4353g00002 260 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 127 260 - -
Vium4353g00002 260 MobiDBLite consensus disorder prediction 1 35 - -
Vium4353g00002 260 Pfam CCT motif 217 259 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4353g00002 Vium-Chr4353 8110 10953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4353g00002 132 259 C2C2-CO-like Transcription Factor Family AT1G73870 46.875 9.30e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4353g00002 CCT 7.6e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4353g00002 - - vum:124837780 437.573