Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4352g00004 ATGGAATCCCGTGATGAAGACGAGGCTGCGAAACTACTGAGGGCTCAAACACACATATGGAATCATATTTTTAACTTCATAAACTCCATGTCCCTTAAATGTGTTGTTGAGTTAGGGATAGCAGACATTATACACAACCATGGCCAACCCATCTCACTCTCTAACCTCATTGCTTCACTTCCAATTCACTCTTCCAAAACTCACTTCATCCCTCGCTTGATGCGAATCATGGTCCATTCTGGCTTCTTCTCTCAACACAGTCACGCCGACAACGACCTTGAAGTCAAGTATGCACTCACTGATGCCTCTTTGCTTCTGCTTAAAAGCCATGAAATGAGTGTGGCACCTTTCCTGCTGGCCATGCTTGATCCAGTTTTAACAAATCCATGGAATCACTTCTCTAATTGGTTCAAAACTGGTCAAACTACACCGTTTGAACTGGCACATGGGAAGTTGCTTTGGGAGTATGCTGGCACTGATCCCAGAATTAACATCTTATTCAATGATGCCATGGCAAGTGATGCTCAACTAATCACTAGTTCGGTGATTGACAAATGCAAAGACGTGTTCATGGGATTGGAGTCATTGGTTGATGTTGGGGGAGGTACAGGAACCATGGGAAAGGCCATTGCCGAATCCTTCCCTCAGTTGGAATGCATCGTATTTGATCTTCCACATGTTGTTTCTGGCTTGCAAGGAAGTGAAAACCTTAAATATGTTGGAGGGGACATGTTTGAGGCGATTCCTCCAACAGATGCCATTTTGTTGAAGTGGATATTACATGACTGGAGCGATGAGGAGTGTGTGAGCATATTGAAGAAATGCAAGGAAGCTATATCTAAGAAAGGGAAAGAAGGGAAGGTGATAATCATAGACATGGTGATGGATAATGAAGTGAAAGATGAAGAATATGTTGAAACACAGCTGTTCTTTGACATGTTGATGATGGTGTTGGTCAAGGGAAAAGAGAGAAACGAGAAGGAATGGGTTAAGTTGTTTTCCTCTGCTGGTTTCAATAACTACACAATAACTCCTGTTTTGGGCTCAAGGTCTCTCATTCAGATCTATCCATAG 1074 0.4274 MESRDEDEAAKLLRAQTHIWNHIFNFINSMSLKCVVELGIADIIHNHGQPISLSNLIASLPIHSSKTHFIPRLMRIMVHSGFFSQHSHADNDLEVKYALTDASLLLLKSHEMSVAPFLLAMLDPVLTNPWNHFSNWFKTGQTTPFELAHGKLLWEYAGTDPRINILFNDAMASDAQLITSSVIDKCKDVFMGLESLVDVGGGTGTMGKAIAESFPQLECIVFDLPHVVSGLQGSENLKYVGGDMFEAIPPTDAILLKWILHDWSDEECVSILKKCKEAISKKGKEGKVIIIDMVMDNEVKDEEYVETQLFFDMLMMVLVKGKERNEKEWVKLFSSAGFNNYTITPVLGSRSLIQIYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4352g00004 357 Gene3D Vaccinia Virus protein VP39 107 357 IPR029063 -
Vium4352g00004 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vium4352g00004 357 Pfam O-methyltransferase domain 130 339 IPR001077 GO:0008171
Vium4352g00004 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vium4352g00004 357 PANTHER O-METHYLTRANSFERASE 13 340 IPR016461 GO:0008168
Vium4352g00004 357 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Vium4352g00004 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 353 IPR029063 -
Vium4352g00004 357 Gene3D - 1 106 IPR036388 -
Vium4352g00004 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Vium4352g00004 357 FunFam O-methyltransferase ZRP4 108 357 - -
Vium4352g00004 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4352g00004 Vium-Chr4352 83156 85048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4352g00004 30 343 Monolignol Biosynthesis Gene Families AT5G54160 33.856 5.99e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4352g00004 - K16040 gmx:100781008 590.112