Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4352g00002 ATGCCTTCAACTGCCTTTCAATGGCTGAGTCTTGTGGGCATCATTTGGCTCCAATCCATAACAGGAACAAACACCAATTTCCCTGCTTACTCATCACAGCTAAAACAGCTTCTTTCCATCTCTCAGTTTCAGCTCAATAACCTTGCTTTTGCCTCTGATGCTGGCAAACTATTTGGTTTTTTATCTGGCCTGGCTTCTATTTACTTACCCCTTTGGCTTGTACTCATGATTGGTTCAACTCTTGGACTGGTTGGCTATGGTGTACAATATCTCTTCATTACAAACCATATCTCCTCTCTCTCCTATTGGCATGTCTTCTTTCTTACTGTTTTAGCAGGAAACAGCATTTGTTGGATTAATACTGTCTGCTATGTCATCGCCATAAGGAACTTTCCATCCGATCGCCAAGTTGCTGTGGGGATAACAACTAGTTACCAAGGGTTAAGTGCTAAGGTTTATACCACCATTGTTGATGTTGCAGGACACAAAAAAAGAGCCATAGCCTTTCTCTTTCTGAACTCAGTCTTGCCTTTTCTAGTTAGCCTGATAACAACTCCTGTGATTAGAGAAATTGAAGTCATAAGTCCTAAACACAGTAGGGTTGGATTTGATGTCATCTTTGCCATAACAATTGCCACTGGAATTTATGCTGTCATGAGCAGTTTGGAGTTTGTCTCAAACAAAATATCTCCACTGGGTAGCCTTATTGGTATTCTAGTGTCCCTTCTCGTGCCTATGTTAGTTCCACTTTCCATGATGATAGTAGGGTCATGGCACAAAAATACAGAAAAACAAAGAGTCTATAATTTCACTACAGAAGCTGGTCATGACAAGAGAACGGAAAATGAAGTGAAAGAGGATGAAGAAAGTGAAGAAGTTCATGATGTAGGTGTAAGAGAAGAAGTAGAAACCAAGTTAATGTTGAGAAGACTTGATTTCTGGTTATACTTCTTCGTGTATTTGTTTGGTGCAACACTGGGTTTGGTGTTTCTGAATAACTTGGGGCAAATAGCCGAATCCCGAGGCTATTCTGGAACTTCATCGTTGGTGTCTTTGTCTTCTTCTTTTGGATTCTTTGGACGTCTCATGCCATCTATAATAGATTACTTTTACAGGGACAACAGGTGTGCAATATCAAAACCAGGTTATATGATGGTATTAATGGCTCCAATTGCTGGGGCGTTTTTCTTACTGCTGAACAAGACTCACCTTGCCTTGTATGTTAGCACTGCCATAATTGGAGTGTGTAATGGTGCAATAACTTCAATTGCTGTGTCGACGACCACTGAACTATTTGGAACCAAGAATTTCTCAGTGAATCATAATGTGGTGGTAGCCAACATTCCTGTGGGGTCCCTTTTGTTTGGATACTTGGCTGCTATTGTTTATCATAAGGGAGGGAATGAAAATGGAAAATGCATGGGCATGGAATGCTACAGGAACACTTTCATCATATGGGGTTCCCTTTCTTTCTTTGGCACTTTTTTGGCTTGCATTCTACATCTTCGGACTCGCAAGTTTTACTCACATAAACTATAG 1539 0.4055 MPSTAFQWLSLVGIIWLQSITGTNTNFPAYSSQLKQLLSISQFQLNNLAFASDAGKLFGFLSGLASIYLPLWLVLMIGSTLGLVGYGVQYLFITNHISSLSYWHVFFLTVLAGNSICWINTVCYVIAIRNFPSDRQVAVGITTSYQGLSAKVYTTIVDVAGHKKRAIAFLFLNSVLPFLVSLITTPVIREIEVISPKHSRVGFDVIFAITIATGIYAVMSSLEFVSNKISPLGSLIGILVSLLVPMLVPLSMMIVGSWHKNTEKQRVYNFTTEAGHDKRTENEVKEDEESEEVHDVGVREEVETKLMLRRLDFWLYFFVYLFGATLGLVFLNNLGQIAESRGYSGTSSLVSLSSSFGFFGRLMPSIIDYFYRDNRCAISKPGYMMVLMAPIAGAFFLLLNKTHLALYVSTAIIGVCNGAITSIAVSTTTELFGTKNFSVNHNVVVANIPVGSLLFGYLAAIVYHKGGNENGKCMGMECYRNTFIIWGSLSFFGTFLACILHLRTRKFYSHKL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4352g00002 512 Gene3D MFS general substrate transporter like domains 7 501 IPR036259 -
Vium4352g00002 512 Pfam Nodulin-like 7 249 IPR010658 -
Vium4352g00002 512 SUPERFAMILY MFS general substrate transporter 11 506 IPR036259 -
Vium4352g00002 512 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4352g00002 Vium-Chr4352 61547 63297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4352g00002 1 511 Nodulin-like Gene Family AT2G30300 48.757 3.90e-155 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4352g00002 - - gmx:100808034 754.977