LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4348g00001	ATGGGGAAGATAGAAAAAACAATAATGGCTTTCATACAACCTTTTCTATCACCCTTCAGCTCATCATCTCTGATGGCTACCCTCCTGGTCCTCATCACCCTTCTCTTTTCCTTTTCCTCTCCTTCGTTGGCCTTGTCTCCCTCAGAAATCTTCCAACCAAAAGACAATTTCTTGATCGATTGTGGAGCAGACAGTGTTTCCACCCTCCCTGATGGACGACATTTCAAAACAGACCCTCAAGCTACTTCTTTCTTGAAAGCCAATGATGAGTACAAAGTCAATGCAGAAGATGCAAATTTTTCTTCACCTATATACAAGAGTGCAAGGATCTTCATCCAGGAAGCTATATACTCCTTCCATTTGGTCCAGCCAGGTTTTCACTGGGTTCGCCTTCATTTCTACCCCGTCAAGAACAGTGTCTTTGATCTCCAGAAGGCCACTTTCTCTGTCTACACCGATACCTACGTGCTTCTCCACAGTTTCAATGTCAACAACACTGACAAGCCAATCCTCAAGGAGTACCTCATCAATGCAACTGAGCCTCAGTTCTCCATTTCCTTCATCCCCTTGAAGAACTCAGCCGCATTCATCAATGCCATTGAGGTTGTTTCCGCTCCTGATGAACTTATCTTCGACACCGCCACCAGCCTTTTCCCTGTTGAGGAGTTCTCCGGCATCACATCCTATGGCTTGCAGCCTGTTTTCAGGGTCAACAATGGAGGGCCTCTCATCACCTCATCGAATGATACCCTTGGGAGGACTTGGGATCCTGATGAGAGTTTCCTCACAAACAAGAACTTGGCCAAGAGTGTCTCGGTGGCTACCAATGTGGTTAAATTCCCCCAACACAATCCTGCAATCTCCTCTCTGACAGCTCCACAAACTGTGTATGCTTCTGCCACTGAGATGGCTGATGCTGGTGTTAACCAGCCAAATTTCAACGTCTCGTGGAAATTTGATGTGGACACTTCTTTTAGCTACCTTGTTAGGCTTCACTTCTGTGATATTGTTAGCAAAGGGCTCAATCAACTCTACTTTAATGTGTATGTTAATGGGAAAATGGCAATCTCTAACTTTGATTTGTCAGCCACCACGGGTGCCTTGTCAACCCCATATTACAAGGACATTGTGGTGAATGCAACATTGATGACCGAGGGACTATCAATTCAGGTTGGTCCAACCTCTGGTGGTAGTGCAAGTGCCAATGCCCTTGTGAACGGCATAGAGGTCATGAAGATGAGCAACACTGTGAACAGTTTGGATGGAGAATTTGGGGTTGATGGAAGAAGTGTTAGTGGTTCTAGCCGCGGCACGGTGGCTGCAGTTGGATTTGCCATGATGTTTGGAGCCTTCGTCGGGCTCGGAGCTATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAGAAGAGGAACAGCTTCTCTTCATGGTTGCTGCCTCTGCATGCTGGTGACACAAGCTTCATGAGCAGCAAGAACTCTATGGGAAAGAGCAACTTTTTCTCCTCATCAATGGGACTAGGCCGGTACTTCTCCTTCGCTGAACTTCAGGAAGCAACCAAGAACTTTGACTCAAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATTTGGGTGTGATAGATGAGGGGACTCAAGTGGCAGTCAAGAGAGGAAACCCTCAATCAGAGCAAGGCATCAACGAATTCCAGACAGAAATCCAAATGTTGTCGAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATCCTGGTTTATGAGTACATGCCCAATGGACACTTCAGAGACCATCTTTATGGAAAGAACATGCCTCCTCTCTCATGGAAGCAAAGGCTAGAGATCTGCATCGGTTCAGCTCGTGGCCTTCACTACCTTCACACAGGCACAGCTCAAGGCATCATTCACCGTGATGTCAAGACCACCAACATCTTGCTTGATGAGAATTTGACAGCCAAGGTTTCTGATTTTGGACTTTCCAAGGATGCACCAATGGGGCAGGGACATGTTAGCACTGCAGTGAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGAAGACAGCAACTCACAGAAAAATCTGATGTCTACTCCTTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGGCCAGCCATCAACCCTCAGTTGCCCCGTGAACAAGTAAACTTGGCCGATTGGGCGATGCAGTGGAAGAGAAAGGGCTTGCTTGACAAGATCATAGACCCTCAACTGATTGGATCAATCAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTGGATAGGCCTTCAATGGGAGATGTTTTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCATTCACACAAGGAAAGCCTGAGGAGGCTCCTACTTCACCTCTCCCACAAGCACCTGCCACTCCTACTGATGACACTCCGACCCAGCCGCCGGCGCCAGCAGCACCAGCAGCACCGGCGGCGGCAGTGCCACGTGCAGAAGTGAATAATGCTACACCAGAAGTGCATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAACAATCTCAATGGCAGGTGA	2631	0.4751	MGKIEKTIMAFIQPFLSPFSSSSLMATLLVLITLLFSFSSPSLALSPSEIFQPKDNFLIDCGADSVSTLPDGRHFKTDPQATSFLKANDEYKVNAEDANFSSPIYKSARIFIQEAIYSFHLVQPGFHWVRLHFYPVKNSVFDLQKATFSVYTDTYVLLHSFNVNNTDKPILKEYLINATEPQFSISFIPLKNSAAFINAIEVVSAPDELIFDTATSLFPVEEFSGITSYGLQPVFRVNNGGPLITSSNDTLGRTWDPDESFLTNKNLAKSVSVATNVVKFPQHNPAISSLTAPQTVYASATEMADAGVNQPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNQLYFNVYVNGKMAISNFDLSATTGALSTPYYKDIVVNATLMTEGLSIQVGPTSGGSASANALVNGIEVMKMSNTVNSLDGEFGVDGRSVSGSSRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPQLIGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKPEEAPTSPLPQAPATPTDDTPTQPPAPAAPAAPAAAVPRAEVNNATPEVHSIDDHSGTAMFAQFNNLNGR	876

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4348g00001	876	FunFam	Receptor-like protein kinase FERONIA	599	810	-	-
	Vium4348g00001	876	Pfam	Malectin-like domain	59	413	IPR024788	-
	Vium4348g00001	876	FunFam	receptor-like protein kinase FERONIA	486	598	-	-
	Vium4348g00001	876	MobiDBLite	consensus disorder prediction	803	844	-	-
	Vium4348g00001	876	CDD	STKc_IRAK	529	793	-	-
	Vium4348g00001	876	Pfam	Protein tyrosine and serine/threonine kinase	526	786	IPR001245	GO:0004672\|GO:0006468
	Vium4348g00001	876	MobiDBLite	consensus disorder prediction	812	838	-	-
	Vium4348g00001	876	FunFam	Putative receptor-like protein kinase	56	206	-	-
	Vium4348g00001	876	SUPERFAMILY	Protein kinase-like (PK-like)	506	790	IPR011009	-
	Vium4348g00001	876	Gene3D	Transferase(Phosphotransferase) domain 1	599	810	-	-
	Vium4348g00001	876	PANTHER	OS07G0166700 PROTEIN	509	799	IPR045272	GO:0004714\|GO:0006468
	Vium4348g00001	876	SMART	serkin_6	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium4348g00001	876	ProSitePatterns	Protein kinases ATP-binding region signature.	529	551	IPR017441	GO:0005524
	Vium4348g00001	876	FunFam	Receptor-like protein kinase FERONIA	230	415	-	-
	Vium4348g00001	876	Gene3D	Phosphorylase Kinase; domain 1	485	598	-	-
	Vium4348g00001	876	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	643	655	IPR008271	GO:0004672\|GO:0006468
	Vium4348g00001	876	ProSiteProfiles	Protein kinase domain profile.	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium4348g00001	876	Gene3D	-	232	415	-	-
	Vium4348g00001	876	Gene3D	-	56	206	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4348g00001	Vium-Chr4348	4249	7922	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4348g00001	51	876	Receptor kinase-like Gene Family	AT4G39110	67.780	0.0	1185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vium4348g00001		Malectin_like	2e-40	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4348g00001	-		-	gmx:100790759	1429.08