Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4347g00001 ATGACGACGCGGGTCACCTCTCCGCCTCCCGAAAAATGTTCTGGCGGTGGCGTCGTGGTCATCTTCCCGGACTGCCGAAGGTCCTCACAGAGAGAACTGGGTAAGGGTTTTGCGGATTCTGGCAGCGTAGAAGGTCCTCACAGAGAGAACCGGCGATTCCCTCCACCGCCACTTACACCTCGGTCGCAGCAGAATTGTAAGGCGCGCTCTTGCTTGCCACCGCTGCAACCGCTGTCTATCGCTCGGCCACCACCCCGGGAGGGAGAGGTTGATTTTGTGTACAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGTATCTTCTATGATGTGTTTGACTACTTGGAGGACTTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTTTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTCATGATGCATTTCAGTTTGTGAAGGCTACAAGAGGGATTGCTGATCCGAATATGGGGTTCACTTGTCAGTTGTTGTAG 543 0.5285 MTTRVTSPPPEKCSGGGVVVIFPDCRRSSQRELGKGFADSGSVEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARPPPREGEVDFVYRTLWLQDSPSEDITSIFYDVFDYLEDFREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFHDAFQFVKATRGIADPNMGFTCQLL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4347g00001 180 PANTHER MKPA PROTEIN 90 180 - -
Vium4347g00001 180 MobiDBLite consensus disorder prediction 31 65 - -
Vium4347g00001 180 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 112 166 IPR000387 GO:0016311|GO:0016791
Vium4347g00001 180 ProSiteProfiles Dual specificity protein phosphatase domain profile. 40 180 IPR020422 GO:0006470|GO:0008138
Vium4347g00001 180 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 180 IPR029021 -
Vium4347g00001 180 Gene3D Protein tyrosine phosphatase superfamily 75 180 IPR029021 -
Vium4347g00001 180 SMART dsp_5 54 180 IPR020422 GO:0006470|GO:0008138
Vium4347g00001 180 Pfam Dual specificity phosphatase, catalytic domain 95 179 IPR000340 GO:0008138|GO:0016311
Vium4347g00001 180 ProSitePatterns Tyrosine specific protein phosphatases active site. 130 140 IPR016130 GO:0016311|GO:0016791
Vium4347g00001 180 CDD DSP 78 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4347g00001 Vium-Chr4347 14618 15263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4347g00001 70 179 Protein tyrosine phosphatase (PTP) family AT3G06110 35.455 6.23e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4347g00001 - - vum:124837759 381.333