Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4346g00007 TTCCGCAAGATTCATGTTAGACTTGTTAGGGAGCTCGAGAAGAAGTTTAGTGGGAAGGATGTTATCTTGGTTGCCACCCGAAGGATATTGAGGCCACCAAAGAAGGGTTCTGCTGTTCAGCGACCACGCAGCCGAACTCTTACTGCTGTTCATGAAGCAATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTGAGGTTTAGAATTGATGGATCCAAGATCATGAAGGTTTTCTTGGACCCGAAGGAGAGAAACAACACTGAGTACAAGTTGGAGACATTTGCTGCAGTGTACAGGAAGCTTTCGGGCAAAGATGTTGTGTTTGATTATCCTGTCTCAGAGGCTTAG 360 0.4639 FRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRFRIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFDYPVSEA 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4346g00007 119 PANTHER 40S RIBOSOMAL PROTEIN S7 1 118 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium4346g00007 119 ProSitePatterns Ribosomal protein S7e signature. 7 20 IPR000554 GO:0003735|GO:0005840|GO:0006412
Vium4346g00007 119 Pfam Ribosomal protein S7e 1 114 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4346g00007 Vium-Chr4346 52049 53149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4346g00007 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 81.513 7.13e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4346g00007 K02993 - gmx:100527680 228.794