Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4346g00005 ATGGTCAAACCCTACACGTCCTCCATGACATGCAAGAAGAGGTGGAGAATGGCTTTGAATGCCATCTCTTTCGTTCTTCATGTCTCCAACAAAGCTTTCAAATTTCAAACTCCAAGGCTCTTGCGCTCATTCTCGTATCTGGCCATTGATGTTGAACAAGACCACGAGCATACCCCACTTGAGAAACCCTTCGACGTTGATCCCGATCTTCTCAGTCACATGGTAAGGGACAAGACGCTCGAGTCTCTCACCCAGTTTGGAGGCGTCAAGGAACTCGCTTCACTTCTTGAAACCGATGTAAAGGGTGGCGTAAGCTACAGCAAGGATGATCTTGATCACCGTAGACGTGTCTTCGGTGTCAACATGTTCACCAAACCTCCATCTAAAGGTTTTTTTTCTTTTGTTCTTGAATCTTTTAAGGACACCACTATTATCATCCTTTTGGCTTGTGCTCTGCTTTCTCTTGGCTTTGGGATCAAGCAGCATGGATGGAAGGAGGGCTGGTACGATGGAGGAAGCATCATATTGGCGGTTATTCTCGTCATTGTTGTCTCTTCCGTGAGCAACTTCAATCAATCTAGACAGTTCCAGAAGCTTTCTGCGAAGAGTGAGAACATTGGAGTCGAAGTAGTACGAGGTGGTCGACGCCGAAGCGTGTCAATCTTTGATGTGGTGGTTGGTGACATTGCGTACCTGAAGATCGGTGATCAGGTTCCAGCTGATGGAGTGCTTTTGGAAGGGTATTCGTTGAAGGTGGACGAATCTAGCATGACGGGGGAGAGTGATCACGTTCACGTGAACGCTGACACAAACCCTTTCTTGTTATCTGGCACAAAGATCAGTGATGGTTTTGCATACATGCTTGTCACTTCTGTGGGCGTGAACACTGCCTGGGGTGAAATGATGGGTTCGATAGCGAGAGAGGTTAATGAGGAGACACCTTTGCAAGTGCGTCTTAATAAATTGACTTCTGCTATTGGCAAGGTTGGGCTGTTGGTGGCTGCGCTTGTTTTGGTGGTATCTATGATACGTTACTTCACAGGAAGTACCAGAGATGATTTTGGTAACCGAGAATTCGTTGGGAGGAAGACAAAGTTTGATGATGTTATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACAATTGTGGTGGTGGCTATTCCAGAAGGGTTGCCTCTGGCTGTTACTTTGACTTTGGCTTATTCCATGAAGAAAATGATGCGGGATAATGCTATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCAGCAACAACAATCTGCACTGATAAAACTGGTACTCTTACGATGAATGAGATGCAGGTGACCGAGGTTTGGGTGGGAAAAGAGGAAATAGCAGAAGGTGCGTATTTGGCACCGAGTTTAGTACAATTATTGAAAGAAGGAATTGGGTTGAATACCGCAGGAAGTGTTTACCAGACCCAACAAACGTCTCCGCCCGAAATTTCAGGTAGTCCAACTGAGAAAGCATTGCTTTCTTGGGCTGTTGTGGATTTGGGGATGGACATTGATGCTGTGAAGCAGCATTGTGAAATCATTCATGTGGAGACGTTTAACTCTGAGAAAAAGAGAAGTGGGATTTTGATGAGGGAGAAGAGAGAGAGCAACAGGATCGTTACACATTGGAAGGGTGCTGCTGAGATGATATTGGCTATGTGTTCAAGTTATTATGGCCGGTCAGGGGAAATCATGATCTTTAATGATGAAGAAAGGGTTCAGATTGAGAACATTGTGAAGGGCATGGCTACCAAAAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGCTCCAACGGGCAGGTCTGTGAAAAGCTTGAAGAGACAGAACTAACACTGTTGGGAATACTTGGATTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGAATCATGTAGGAATGCTGGAGTGAAGATCAAGATGATCACCGGAGATAATGTGCACACAGCGAAGGCCATAGCCTCTGAATGCGGGATTCTTGATCCTAGTGAAGAATTGGATGAAGATGCTGTGGTTGAAGGGTTTCAATTCAGAAATTACTCGCATGAGGAAAGAATGGATAAGATTGACAGAATCAGGGTCATGGCCAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTAATGTGGTGGCAGTCACAGGTGATGGCACAAATGACGCACCTGCTCTAAAAGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCAGATATTGTTATCCTTGACGACAATTTCTCTTCTGTGGTTACAGTAATCAGATGGGGAAGATGTGTGTACAAAAACATTCAGAAGTTCATTCAGTTTCAGCTCACAGTTAATGTTGCTGCACTGGTCATAAACTTTGTAGCTGCAGTTTCTTCTGGTAAGGTGCCTCTTACAGCAGTCCAGCTTTTGTGGGTAAACCTGATAATGGATACCCTTGGAGCTTTGGCTTTAGCCACCGAGGAACCTACTTATGATCTCATGAAGATGCCACCTGTAGGTAGAGTTGAGCCACTGATAACTAGAGTTATGTGGAGGAACCTGATTTCACAGGCATTGTACCAGGTTATGGTGTTGCTGGTTTTAGAATTCAGAGGAAGATCAATCTTTGATGTTACTGAGAAGGTGAAGAACACCGTTATCTTCAATTCTTTTGTCCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGGAACTGGAGAAGAAGAACATATTTAAGGGACTTGGTAAGAATAGGTTGTTCATTGTAATTGTGAGCCTAACTGTTGTTCTTCAGCTAGTGATGGTTGAGTTTCTGAAAAAGTTTGCCAATACTGAGAGATTGACTTGGGAGCAATGGGGTGTTTGTGTTAGCATTGGAGCTTTGTCTTGGCCAATTGGTGTGCTGGTGAAGTGTATCCCAGTTGTTCGCAAGAAGTAG 2973 0.4474 MVKPYTSSMTCKKRWRMALNAISFVLHVSNKAFKFQTPRLLRSFSYLAIDVEQDHEHTPLEKPFDVDPDLLSHMVRDKTLESLTQFGGVKELASLLETDVKGGVSYSKDDLDHRRRVFGVNMFTKPPSKGFFSFVLESFKDTTIIILLACALLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFQKLSAKSENIGVEVVRGGRRRSVSIFDVVVGDIAYLKIGDQVPADGVLLEGYSLKVDESSMTGESDHVHVNADTNPFLLSGTKISDGFAYMLVTSVGVNTAWGEMMGSIAREVNEETPLQVRLNKLTSAIGKVGLLVAALVLVVSMIRYFTGSTRDDFGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMQVTEVWVGKEEIAEGAYLAPSLVQLLKEGIGLNTAGSVYQTQQTSPPEISGSPTEKALLSWAVVDLGMDIDAVKQHCEIIHVETFNSEKKRSGILMREKRESNRIVTHWKGAAEMILAMCSSYYGRSGEIMIFNDEERVQIENIVKGMATKSLRCIAFAQKSSNGQVCEKLEETELTLLGILGLKDPCRPGVEAAVESCRNAGVKIKMITGDNVHTAKAIASECGILDPSEELDEDAVVEGFQFRNYSHEERMDKIDRIRVMARSSPFDKLLMVQCLKQKGNVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVIRWGRCVYKNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEEPTYDLMKMPPVGRVEPLITRVMWRNLISQALYQVMVLLVLEFRGRSIFDVTEKVKNTVIFNSFVLCQVFNEFNARELEKKNIFKGLGKNRLFIVIVSLTVVLQLVMVEFLKKFANTERLTWEQWGVCVSIGALSWPIGVLVKCIPVVRKK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4346g00005 990 ProSitePatterns E1-E2 ATPases phosphorylation site. 432 438 IPR018303 -
Vium4346g00005 990 Gene3D - 107 306 - -
Vium4346g00005 990 PANTHER CATION TRANSPORTING ATPASE 61 986 - -
Vium4346g00005 990 NCBIfam HAD-IC family P-type ATPase 374 456 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4346g00005 990 NCBIfam HAD-IC family P-type ATPase 700 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4346g00005 990 Pfam Cation transporting ATPase, C-terminus 814 983 IPR006068 -
Vium4346g00005 990 SUPERFAMILY Calcium ATPase, transmembrane domain M 87 988 IPR023298 -
Vium4346g00005 990 FunFam Calcium-transporting ATPase 440 629 - -
Vium4346g00005 990 Pfam haloacid dehalogenase-like hydrolase 427 743 - -
Vium4346g00005 990 Gene3D - 137 977 - -
Vium4346g00005 990 Gene3D - 427 774 IPR023214 -
Vium4346g00005 990 SUPERFAMILY HAD-like 428 834 IPR036412 -
Vium4346g00005 990 Gene3D - 440 629 IPR023299 GO:0000166
Vium4346g00005 990 Pfam E1-E2 ATPase 208 409 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 729 748 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 430 444 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 253 267 - -
Vium4346g00005 990 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Vium4346g00005 990 FunFam Calcium-transporting ATPase 623 774 - -
Vium4346g00005 990 SFLD p-type atpase 412 782 IPR044492 -
Vium4346g00005 990 NCBIfam calcium-translocating P-type ATPase, PMCA-type 79 986 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium4346g00005 990 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 436 634 IPR023299 GO:0000166
Vium4346g00005 990 Pfam Cation transporter/ATPase, N-terminus 87 154 IPR004014 -
Vium4346g00005 990 SFLD Haloacid Dehalogenase 412 782 - -
Vium4346g00005 990 SMART Cation_ATPase_N_a_2 79 159 IPR004014 -
Vium4346g00005 990 SUPERFAMILY Calcium ATPase, transduction domain A 208 304 IPR008250 -
Vium4346g00005 990 PRINTS H+-transporting ATPase (proton pump) signature 761 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4346g00005 990 PRINTS H+-transporting ATPase (proton pump) signature 583 601 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4346g00005 990 PRINTS H+-transporting ATPase (proton pump) signature 729 745 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium4346g00005 990 FunFam Calcium-transporting ATPase 746 988 - -
Vium4346g00005 990 FunFam Calcium-transporting ATPase 183 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4346g00005 Vium-Chr4346 42803 45888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4346g00005 4 986 Primary Pumps ATPases AT3G22910 64.777 0.0 1219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4346g00005 K01537 - gmx:100784119 1545.41