Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4337g00001 TTCCAGACCTCAGAAAAGCCCGAGACAGTGATCAGGTTCTTCAGAAATCACGGTTTCTCTAATATTCAAATAAACTATATGGTTACAAAGGCACCGTGGTTGCTTTCTTGTGACCCCTGCAAAAGGTTATTGCCAAAGTTTGAGTTTTTTCTCTCAAAGGATGTTTCTAGCTCTGAAATTGTTGACCTAATAAGTAAGTACCCTAGAGTACTGCGTCCAAGCCTGGAGAATCATATAGTCCCAACCTATGAATTGATATATAAGTTCTTGCAATCTCATGTGAGGACTACTCGTTGTATGTTTGGTAATACATTTTACTCTTGCGGGGATCGTCTGGCGCACAACATCATATTGCTGCTAGAGAATGAAGTAAAAGAATCAAACATTGCAAGATTGCTTGGGAACCATAGTAAGGTGATCTTTGCCTCAAATGATATAATTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAGCAACTTTTGTTATAGCGTTGATGGCCATAAAAAAAACAAGTCCTTCCCTGTGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCTGTGTCTGAAGCATTTAGGAGGCACCCTCACGTTATGTTGACATCTATTAAAAAAATAAATGCTGTGATGAACCTTTGGGTCAATCAGTTG 678 0.3923 FQTSEKPETVIRFFRNHGFSNIQINYMVTKAPWLLSCDPCKRLLPKFEFFLSKDVSSSEIVDLISKYPRVLRPSLENHIVPTYELIYKFLQSHVRTTRCMFGNTFYSCGDRLAHNIILLLENEVKESNIARLLGNHSKVIFASNDIIKLVKEVKDLGFDPSKATFVIALMAIKKTSPSLWKEKVDTFKKWGWSDEAVSEAFRRHPHVMLTSIKKINAVMNLWVNQL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4337g00001 226 PANTHER CGI-12 PROTEIN-RELATED 4 225 IPR003690 GO:0003690|GO:0006355
Vium4337g00001 226 Gene3D Transcription termination factor 3, mitochondrial 1 103 IPR038538 -
Vium4337g00001 226 Gene3D Transcription termination factor 3, mitochondrial 104 226 IPR038538 -
Vium4337g00001 226 SMART mt_12 25 56 IPR003690 GO:0003690|GO:0006355
Vium4337g00001 226 SMART mt_12 61 92 IPR003690 GO:0003690|GO:0006355
Vium4337g00001 226 SMART mt_12 130 159 IPR003690 GO:0003690|GO:0006355
Vium4337g00001 226 Pfam mTERF 12 218 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4337g00001 Vium-Chr4337 582 1259 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4337g00001 mTERF 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4337g00001 K15031 - gmx:102663414 292.352