Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00054 ATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGCAAGAGATTGATTTGTTAAAGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAAAATGGTTCTCTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAGGGTGCAAACATACTGACAACTAAGGAGGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGATTCTGCAGATGCAGAAGATTCGGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGGCAATGCTTCAGTTCCTAATTTTTCCGATGAAAGAATACAAAAAGAAGATCATGTTCCATCAGATCACGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCGAATAGAGAAGTTGGTAATTCCGAGCCTACCAGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGACCAAGAGGTCAAGATAATGGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTGCTTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCCACATCCACTTCTCATGTGGTTAAAGGTAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGTAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTCACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTTTGACATTACAAATGTTTATTGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGTGGGGGGTGGATTTTCAGTTGATGGTTCGGCACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCGTTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTTCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGAGTGCATTGAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCGGATGTTGAATCCAGACAACGAATCTCCACTAACAGGACATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCTAATGGGATATCAGTGACAGGAGTTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAGAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGCGAAGGAGCTGCTTCCACATCTGGGATCGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGCCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAGAATGATCTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCGCTACACATAAACACCGTTTTGTAA 4119 0.4178 MLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKELSSVAAQGRKSHEGNASVPNFSDERIQKEDHVPSDHVLTLAIREKSLLQTGSSNLSPNREVGNSEPTSNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDACLDDLFHPLDKQPGDVAAEASTSTSTSHVVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFHQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSVGGGFSVDGSAQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSASALKERENMDRWKTDPSRADVESRQRISTNRTSTDRPPKSTEPSSNGISVTGVTHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00054 1372 SMART serkin_6 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00054 1372 PRINTS Tyrosine kinase catalytic domain signature 223 245 IPR001245 GO:0004672|GO:0006468
Vium4335g00054 1372 PRINTS Tyrosine kinase catalytic domain signature 76 89 IPR001245 GO:0004672|GO:0006468
Vium4335g00054 1372 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Vium4335g00054 1372 PRINTS Tyrosine kinase catalytic domain signature 114 132 IPR001245 GO:0004672|GO:0006468
Vium4335g00054 1372 FunFam MAP3K epsilon protein kinase 1 558 772 - -
Vium4335g00054 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 389 431 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 272 336 - -
Vium4335g00054 1372 CDD STKc_Cdc7_like 1 254 - -
Vium4335g00054 1372 SUPERFAMILY ARM repeat 566 1264 IPR016024 -
Vium4335g00054 1372 FunFam MAP3K epsilon protein kinase 1 1 286 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 471 495 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 853 878 - -
Vium4335g00054 1372 Gene3D - 556 763 IPR011989 -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 761 785 - -
Vium4335g00054 1372 SUPERFAMILY ARM repeat 1241 1354 IPR016024 -
Vium4335g00054 1372 SUPERFAMILY Protein kinase-like (PK-like) 2 255 IPR011009 -
Vium4335g00054 1372 ProSitePatterns Protein kinases ATP-binding region signature. 6 29 IPR017441 GO:0005524
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 839 906 - -
Vium4335g00054 1372 ProSiteProfiles Protein kinase domain profile. 1 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00054 1372 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 708 - -
Vium4335g00054 1372 Gene3D - 1027 1369 IPR011989 -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 406 422 - -
Vium4335g00054 1372 SMART arm_5 1157 1196 IPR000225 GO:0005515
Vium4335g00054 1372 SMART arm_5 1111 1155 IPR000225 GO:0005515
Vium4335g00054 1372 SMART arm_5 594 634 IPR000225 GO:0005515
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 283 306 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 467 496 - -
Vium4335g00054 1372 FunFam MAP3K epsilon protein kinase 1-like 1026 1367 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 879 906 - -
Vium4335g00054 1372 Gene3D Transferase(Phosphotransferase) domain 1 1 290 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 314 328 - -
Vium4335g00054 1372 MobiDBLite consensus disorder prediction 355 377 - -
Vium4335g00054 1372 Pfam Protein kinase domain 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00054 Vium-Chr4335 229681 246463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00054 1 1372 MAP Kinase Kinase Kinase AT3G13530 72.406 0.0 1954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vium4335g00054 Pkinase 7.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00054 - - gmx:100813256 2459.49