Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00053 ATGTCGCGCCAGACGACGACGACGGCGTTCACTAAATCGAAGACTCTGGACAATAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAAAATGGTTCTCTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAGGGTGCAAACATACTGACAACTAAGGAGGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGATTCTGCAGATGCAGAAGATTCGGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGGCAATGCTTCAGTTCCTAATTTTTCCGATGAAAGAATACAAAAAGAAGATCATGTTCCATCAGATCACGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCGAATAGAGAAGTTGGTAATTCCGAGCCTACCAGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGACCAAGAGGTCAAGATAATGGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTGCTTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCCACATCCACTTCTCATGTGGTTAAAGGTAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGTAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTCACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTTTGACATTACAAATGTTTATTGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGTGGGGGGTGGATTTTCAGTTGATGGTTCGGCACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCGTTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTTCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGAGTGCATTGAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCGGATGTTGAATCCAGACAACGAATCTCCACTAACAGGACATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCTAATGGGATATCAGTGACAGGAGTTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAGAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGCGAAGGAGCTGCTTCCACATCTGGGATCGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGCCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAGAATGATCTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCGCTACACATAAACACCGTTTTGTAA 4158 0.4194 MSRQTTTTAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKELSSVAAQGRKSHEGNASVPNFSDERIQKEDHVPSDHVLTLAIREKSLLQTGSSNLSPNREVGNSEPTSNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDACLDDLFHPLDKQPGDVAAEASTSTSTSHVVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFHQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSVGGGFSVDGSAQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSASALKERENMDRWKTDPSRADVESRQRISTNRTSTDRPPKSTEPSSNGISVTGVTHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00053 1385 SUPERFAMILY ARM repeat 579 1277 IPR016024 -
Vium4335g00053 1385 ProSiteProfiles Protein kinase domain profile. 20 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00053 1385 CDD STKc_Cdc7_like 19 267 - -
Vium4335g00053 1385 FunFam MAP3K epsilon protein kinase 1 17 299 - -
Vium4335g00053 1385 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Vium4335g00053 1385 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672|GO:0006468
Vium4335g00053 1385 PRINTS Tyrosine kinase catalytic domain signature 127 145 IPR001245 GO:0004672|GO:0006468
Vium4335g00053 1385 PRINTS Tyrosine kinase catalytic domain signature 193 215 IPR001245 GO:0004672|GO:0006468
Vium4335g00053 1385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 852 919 - -
Vium4335g00053 1385 FunFam MAP3K epsilon protein kinase 1 571 785 - -
Vium4335g00053 1385 Pfam Protein kinase domain 21 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 419 435 - -
Vium4335g00053 1385 SUPERFAMILY ARM repeat 1254 1367 IPR016024 -
Vium4335g00053 1385 Gene3D - 1040 1382 IPR011989 -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 402 444 - -
Vium4335g00053 1385 SMART arm_5 1124 1168 IPR000225 GO:0005515
Vium4335g00053 1385 SMART arm_5 607 647 IPR000225 GO:0005515
Vium4335g00053 1385 SMART arm_5 1170 1209 IPR000225 GO:0005515
Vium4335g00053 1385 Gene3D Transferase(Phosphotransferase) domain 1 17 303 - -
Vium4335g00053 1385 SMART serkin_6 20 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00053 1385 Gene3D - 569 776 IPR011989 -
Vium4335g00053 1385 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 721 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 481 509 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 285 349 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 327 341 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 368 390 - -
Vium4335g00053 1385 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 774 798 - -
Vium4335g00053 1385 SUPERFAMILY Protein kinase-like (PK-like) 17 268 IPR011009 -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 296 319 - -
Vium4335g00053 1385 FunFam MAP3K epsilon protein kinase 1-like 1039 1380 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 484 508 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 866 891 - -
Vium4335g00053 1385 MobiDBLite consensus disorder prediction 892 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00053 Vium-Chr4335 229681 246471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00053 1 1385 MAP Kinase Kinase Kinase AT3G13530 71.875 0.0 1966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vium4335g00053 Pkinase 3.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00053 - - gmx:100813256 2471.81