Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00052 ATGTCGCGCCAGACGACGACGACGGCGTTCACTAAATCGAAGACTCTGGACAATAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGCAAGAGATTGATTTGTTAAAGAATCTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCTAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAAAATGGTTCTCTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCGGTATATATAGCCCAGGTGTTGGAAGGTTTGGTTTATCTTCATGAACAAGGAGTTATTCATCGGGATATTAAGGGTGCAAACATACTGACAACTAAGGAGGGTCTTGTGAAACTAGCTGATTTTGGTGTTGCTACAAAGCTAACAGAGGCAGATGTTAACACTCATTCAGTTGTTGGAACACCCTACTGGATGGCCCCTGAGGTTATAGAAATGGCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCAGCTCTTTTCCGTATTGTCCAGGATGAGCACCCGCCAATTCCCGATAGCCTTTCACCTGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATTCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAATTGTAGACGTGTTCTGCAGTCTTCTCTTCGTCATAGTGCAACACTAAGAAATATAGAGGAAGATGATTCTGCAGATGCAGAAGATTCGGGTGGTTATCATAAGAGTGCTTATGAAGGCTCTTCTGTGGAGAAAGAGGATTCTGGAAAAGAGCTTTCATCTGTGGCTGCTCAGGGCAGAAAATCTCATGAAGGCAATGCTTCAGTTCCTAATTTTTCCGATGAAAGAATACAAAAAGAAGATCATGTTCCATCAGATCACGTTCTTACCTTAGCCATTCGTGAGAAGTCACTTCTACAAACTGGATCTAGCAATCTCTCTCCGAATAGAGAAGTTGGTAATTCCGAGCCTACCAGCAATCACGAAATTTCAAATGAAGGACTTCATGAAGTTATGATGAATGGAGAGGTTGGATCACCACAATCGAGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGCTCTGTAAACAATGGTAACAAATCATTTGCTTTTGGACCAAGAGGTCAAGATAATGGTTCCCTCAAGGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTGCTTAGATGATTTATTCCACCCATTAGATAAACAACCTGGCGATGTTGCAGCAGAGGCATCCACATCCACATCCACTTCTCATGTGGTTAAAGGTAACACATCTACAACTGATGGTGGGAAAAATGACCTGGCTAAAGAGTTGAGGGCCACAATTGCTCGTAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAGTGGTGGGAATCTTTTGCATCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTTGATGAAAAGCTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAAACTAGTTGGTTCATTAAAACCAGAGGAATCAGAAGATGTGATTGTGTCTGCATGTCAGAAACTTATTGGTATATTTCACCAACGCCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGATTTGCTAGAAGTTCCTAAAACACGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACTGATTTCCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGAATGGAAGCAGCTTATTTTTTACAGCAGCTTTGTCAGTCGAGTTCTTTGACATTACAAATGTTTATTGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCCGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACTCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACTCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCTGTGGGGGGTGGATTTTCAGTTGATGGTTCGGCACAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTATATTAATCAGAAAGAGGCGTTGCTATCTTCAGTAGACCAGCAAGATTCCTCTAAAGTGAGACGTGGAGTTCTTGATCATCACTTAGAACAGTCACATCCTTCATCCTCCAATCCTCGAAGATCAGATGCTAACTACTCCATAGATGATGCCATGTCATTGGAGAAGAATTCAACTCAAACACCCAGAGAATCTTCCGCGAGTGCATTGAAAGAGCGAGAGAATATGGATCGTTGGAAAACTGATCCTTCTCGAGCGGATGTTGAATCCAGACAACGAATCTCCACTAACAGGACATCAACTGATAGGCCACCAAAATCAACAGAGCCATCATCTAATGGGATATCAGTGACAGGAGTTACACACCAGGAACAAGTTAGGCCTCTTCTTAGCTTGTTGGACAAAGAGCCACCATCTGGGCGCTTTTCTGGACAGCTCGAGTATGTACGTCAGATGTCAGGATTAGAAAGACATGAGAGTGTACTCCCTTTGTTACATGCATCCGAAAAGAAAACGAATGGTGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAAGGAAAACGGAAGTCTTGACTCCAGTTCTAGAGTTTCTCATAAAGTCACTCCAAAGAAATTGGGGACTTTCAATTCCAGCGAAGGAGCTGCTTCCACATCTGGGATCGCATCACAGACAGCATCAGGTGTCCTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAATATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCTGACACAACAGTGAAATCTTATATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGCGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCTCTTGTATCAGAGATACATCACGAGGTCTTGAATGCCCTATTCAATTTATGCAAGATAAATAAGCGAAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTAATGCAATTCATTACATCCAATTCTCCCTTGAAACAGTATGCTTTGCCTCTTCTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGCTTTGGTCTGTGACAGCACTAGACTCTATTGCAGTTTGTTTAGCCCATGACAACGATAATAGGAAGGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTCATGTCCAGAGCGCCATTTTGTGCACATATTGGAGCCATTCTTGAAAATAATCACAAAATCTTCGAGGATTAATACGACATTGGCTATTAATGGGTTAACGCCGTTGCTCATTGCAAGGCTTGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCCGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAGAATGATCTACCTGAAAAGCTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTTAAACAGATGGCTACCTCATTACTTAAAGCGCTACACATAAACACCGTTTTGTAA 4179 0.4188 MSRQTTTTAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMAGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDSRQRPDAKTLLSHPWIQNCRRVLQSSLRHSATLRNIEEDDSADAEDSGGYHKSAYEGSSVEKEDSGKELSSVAAQGRKSHEGNASVPNFSDERIQKEDHVPSDHVLTLAIREKSLLQTGSSNLSPNREVGNSEPTSNHEISNEGLHEVMMNGEVGSPQSRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDACLDDLFHPLDKQPGDVAAEASTSTSTSHVVKGNTSTTDGGKNDLAKELRATIARKQWEKESEIGQANSGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFHQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSVGGGFSVDGSAQRPRSGILDPTHPYINQKEALLSSVDQQDSSKVRRGVLDHHLEQSHPSSSNPRRSDANYSIDDAMSLEKNSTQTPRESSASALKERENMDRWKTDPSRADVESRQRISTNRTSTDRPPKSTEPSSNGISVTGVTHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQMSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGKENGSLDSSSRVSHKVTPKKLGTFNSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQSCPERHFVHILEPFLKIITKSSRINTTLAINGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00052 1392 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 728 - -
Vium4335g00052 1392 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 334 348 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 375 397 - -
Vium4335g00052 1392 CDD STKc_Cdc7_like 19 274 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 409 451 - -
Vium4335g00052 1392 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00052 1392 FunFam MAP3K epsilon protein kinase 1-like 1046 1387 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 873 898 - -
Vium4335g00052 1392 Gene3D - 1047 1389 IPR011989 -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 292 356 - -
Vium4335g00052 1392 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vium4335g00052 1392 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00052 1392 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Vium4335g00052 1392 Gene3D Transferase(Phosphotransferase) domain 1 17 310 - -
Vium4335g00052 1392 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Vium4335g00052 1392 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Vium4335g00052 1392 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Vium4335g00052 1392 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 859 926 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 491 515 - -
Vium4335g00052 1392 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4335g00052 1392 FunFam MAP3K epsilon protein kinase 1 578 792 - -
Vium4335g00052 1392 Gene3D - 576 783 IPR011989 -
Vium4335g00052 1392 SMART arm_5 614 654 IPR000225 GO:0005515
Vium4335g00052 1392 SMART arm_5 1177 1216 IPR000225 GO:0005515
Vium4335g00052 1392 SMART arm_5 1131 1175 IPR000225 GO:0005515
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 899 926 - -
Vium4335g00052 1392 SUPERFAMILY ARM repeat 1261 1374 IPR016024 -
Vium4335g00052 1392 SUPERFAMILY ARM repeat 586 1284 IPR016024 -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 426 442 - -
Vium4335g00052 1392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 303 326 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 487 516 - -
Vium4335g00052 1392 MobiDBLite consensus disorder prediction 781 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00052 Vium-Chr4335 229681 246629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00052 1 1392 MAP Kinase Kinase Kinase AT3G13530 72.372 0.0 1985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Vium4335g00052 Pkinase 4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00052 - - gmx:100813256 2491.46