Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00051 ATGTACTTGAGGAGAATACAATGCAGGAGAGATCGATTATCGGCTTTGGTGTTGCATCCATCAAAATTCTTCTTTAGGCCAAGATTCTCTGATCATAAATCATTTCAATCTTTGTCCCCAAAGACTGCTGTGGGAGAATATGCTTCACGTGGCAGGATCATCAGAGAACGTTTTTTAGGTTCATATTCATGTAAACATACTTCATCTACAATTACTTTTGCTGCTCGGGACAAAAGGCCTAGTTTATGTCATAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATGATGGAACCAACTTTGATAAAAGGCAGAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTACTGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAGTGGCTTAATAATGAGAGGCTAACGATAGAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAGGGATAAGTTTAAAAATGAGTTCACAAGAAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTAATGAAAATACAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCAACTTTTGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTGCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCAGACTACGAGTCTGATGATGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTCGAATCAGAGAATGATGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACAGAGGCAAAGTCAGATGCAAGTGACAATGAAGATGCTGTAGCAGCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACAAAGTAGAGGAATTTGAGAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAGTCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAGGTACACTGGGCCATCTGTTCAAGTTACAGACGAGGATAGACCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTCAATGGCGATCGAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAATCTCAGTGATGATCATACCAAACCCCCAATTTATTGGATTCATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCGTAAGGTTGAGGAGATGTTTGACCAGTTATCTGGTCCAATAATATTGATTTGTGGGCAAAATAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTACCAAACTTTGGACGTGTGGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGACGAAATTAGCAAGCTCTTTTCTAATGTTCTGAGTATACATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAGCATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCAAAGCTGAAAAAGTAGTAGGCTGGGCAAAAAATCACTACTTGTCGTCATGCTTGATTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCACGATTGACGAGCCAGGAAACAATGTCACGGAAGTCTTCTCAGAGCCTTAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCATGAACTTGTAATTCTTCCAATGAGAAGGCCAGCGCTTTTCTCTCGAGGAAATCTGTTACGGCCCTGTAAAGGAATATTGCTTTTTGGTCCTCCTGGCACTGGTAAGACCCTGCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTCTTCTCATTTGCCAGCAAACTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCCAGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTTGGTGCCACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCGATGCTGAAAATCGAATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTCAGTTAGACAAACTTGCTAACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGTATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGGAAGCCAGTAATGATGGTACAACTTCAATACTAAGGCCTCTCAATCTGGATGATTTTGTTCAGTCAAAAGCCAAGGTGGGTCCATCAGTTGCCCATGATGCAACAAGCATGACTGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3066 0.407 MYLRRIQCRRDRLSALVLHPSKFFFRPRFSDHKSFQSLSPKTAVGEYASRGRIIRERFLGSYSCKHTSSTITFAARDKRPSLCHNSTQLRAYSSESDGRNASEDKQVHVNDGTNFDKRQNQQEKFGKEVEYCNAHARLGEQEQEEWLNNERLTIENKRRESPFLTRRDKFKNEFTRRIIPWEKINISWDTFPYHINENTKNLLVECAASHLRHNKFASTFGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVALLVLDNSILAPYDIDDDLSSDYESDDDNAESGEEGSLESENDDDNEASNEEEWASSTEAKSDASDNEDAVAAAEAHLKKVKAAVLRKLVPYKVEEFEKIVAGESESSESSKSNSNDTKSSDKSGCQLKKGDRVRYTGPSVQVTDEDRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENLSDDHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNRNEFFRKVEEMFDQLSGPIILICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEISKLFSNVLSIHPPKDENQLATFKKQLEEDKKIVTSRSNLSILRKVLEEHQLSCIDLLHLNTDGIVLTKLKAEKVVGWAKNHYLSSCLIPSVKGERLCLPRESLEIAVSRLTSQETMSRKSSQSLKNLAKDEFESNFISSVVPPGEIGVKFDDVGALEDVKKALHELVILPMRRPALFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFQLDKLANLTDGYSGSDLKNLCIAAAYRPVQELLENEKKEASNDGTTSILRPLNLDDFVQSKAKVGPSVAHDATSMTELRKWNEMYGEGGNRTKSPFGFGS 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 276 308 - -
Vium4335g00051 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 956 IPR027417 -
Vium4335g00051 1021 Pfam AAA+ lid domain 922 955 IPR041569 -
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 93 119 - -
Vium4335g00051 1021 SMART AAA_5 763 900 IPR003593 GO:0016887
Vium4335g00051 1021 Gene3D - 726 1002 IPR027417 -
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 310 325 - -
Vium4335g00051 1021 Pfam ATPase family associated with various cellular activities (AAA) 767 897 IPR003959 GO:0005524|GO:0016887
Vium4335g00051 1021 Gene3D - 899 985 - -
Vium4335g00051 1021 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 169 1014 - -
Vium4335g00051 1021 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 725 901 - -
Vium4335g00051 1021 ProSitePatterns AAA-protein family signature. 870 889 IPR003960 GO:0005524|GO:0016887
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 358 411 - -
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 362 378 - -
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 276 325 - -
Vium4335g00051 1021 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00051 Vium-Chr4335 209282 228849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00051 726 958 Calmodulin-binding Proteins AT3G56690 39.407 8.15e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00051 - - gmx:100812718 1667.13