Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00048 ATGTACTTGAGGAGAATACAATGCAGGAGAGATCGATTATCGGCTTTGGTGTTGCATCCATCAAAATTCTTCTTTAGGCCAAGATTCTCTGATCATAAATCATTTCAATCTTTGTCCCCAAAGACTGCTGTGGGAGAATATGCTTCACGTGGCAGGATCATCAGAGAACGTTTTTTAGGTTCATATTCATGTAAACATACTTCATCTACAATTACTTTTGCTGCTCGGGACAAAAGGCCTAGTTTATGTCATAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACAAGTACATGTTAATGATGGAACCAACTTTGATAAAAGGCAGAATCAACAAGAGAAGTTTGGGAAAGAGGTTGAGTACTGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAGTGGCTTAATAATGAGAGGCTAACGATAGAAAATAAAAGGAGAGAATCACCATTTTTGACAAGGAGGGATAAGTTTAAAAATGAGTTCACAAGAAGAATTATTCCTTGGGAAAAAATAAATATTTCCTGGGACACATTTCCTTATCATATTAATGAAAATACAAAAAATCTTCTTGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCAACTTTTGGTACTCGGCTCTCATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTGCTCTTTTAGTGCTCGATAATAGCATCCTTGCTCCTTATGACATTGATGATGATTTATCATCAGACTACGAGTCTGATGATGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTCGAATCAGAGAATGATGATGATAATGAAGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACAGAGGCAAAGTCAGATGCAAGTGACAATGAAGATGCTGTAGCAGCAGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACAAAGTAGAGGAATTTGAGAAGATTGTGGCTGGAGAATCTGAGAGTTCCGAATCCTCCAAGTCTAATTCTAATGATACCAAATCTTCTGATAAGTCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAGGTACACTGGGCCATCTGTTCAAGTTACAGACGAGGATAGGGTTATACTGGGGAAGATACCAACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGACCTTTAACTAATGGTCAGAGAGGAGAGGTATATGAGGTCAATGGCGATCGAGTTGCAGTCATCTTGGATATTAATGAAGACAAGGTCAACGAGGGTGAGGTGGAGAATCTCAGTGATGATCATACCAAACCCCCAATTTATTGGATTCATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATTGCTGTGGAGGCTTTATGTGAGGTTTTGCGTAGAAAACAGCCTCTTATTGTCTATTTTCCTGACAGTTCACATTGGTTACATAAATCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCGTAAGGTTGAGGAGATGTTTGACCAGTTATCTGGTCCAATAATATTGATTTGTGGGCAAAATAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTACCAAACTTTGGACGTGTGGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGACGAAATTAGCAAGCTCTTTTCTAATGTTCTGAGTATACATCCACCCAAGGATGAGAATCAGCTGGCAACATTCAAGAAACAACTTGAAGAAGATAAAAAAATCGTGACTTCACGTAGTAATTTGAGTATACTACGGAAGGTTCTCGAAGAGCATCAGCTATCATGCATTGACCTTTTACATTTAAATACTGATGGCATCGTTTTGACAAAGCTCAAAGCTGAAAAAGTAGTAGGCTGGGCAAAAAATCACTACTTGTCGTCATGCTTGATTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCACGATTGACGAGCCAGGAAACAATGTCACGGAAGTCTTCTCAGAGCCTTAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTACCTCCTGGTGAAATAGGGGTGAAGTTTGATGACGTAGGTGCTCTTGAAGATGTGAAAAAGGCACTTCATGAACTTGTAATTCTTCCAATGAGAAGGCCAGCGCTTTTCTCTCGAGGAAATCTGTTACGGCCCTGTAAAGGAATATTGCTTTTTGGTCCTCCTGGCACTGGTAAGACCCTGCTGGCGAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTCTTCTCATTTGCCAGCAAACTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCCAGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAATTCATGGCAGCCTGGGATGGATTGAGGTCAAAAGAAAACCAACGAATCCTTATTCTTGGTGCCACAAACCGGCCATTTGATCTTGATGATGCTGTTATTCGTCGTTTACCAAGAAGGATATATGTTGATTTACCCGATGCTGAAAATCGAATGAAGATTTTAAGCATCTTTCTAGCACAAGAAAATTTGGATTCTGAATTTCAGTTAGACAAACTTGCTAACTTGACTGATGGATACTCGGGAAGCGATTTGAAGAACCTCTGTATTGCTGCAGCGTATAGACCTGTTCAAGAGCTCTTAGAGAATGAAAAGAAGGAAGCCAGTAATGATGGTACAACTTCAATACTAAGGCCTCTCAATCTGGATGATTTTGTTCAGTCAAAAGCCAAGGTGGGTCCATCAGTTGCCCATGATGCAACAAGCATGACTGAGTTGAGGAAGTGGAATGAAATGTATGGAGAAGGTGGTAACAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3132 0.4068 MYLRRIQCRRDRLSALVLHPSKFFFRPRFSDHKSFQSLSPKTAVGEYASRGRIIRERFLGSYSCKHTSSTITFAARDKRPSLCHNSTQLRAYSSESDGRNASEDKQVHVNDGTNFDKRQNQQEKFGKEVEYCNAHARLGEQEQEEWLNNERLTIENKRRESPFLTRRDKFKNEFTRRIIPWEKINISWDTFPYHINENTKNLLVECAASHLRHNKFASTFGTRLSSSSGRILLQSIPGTELYRERLVRALAQDLQVALLVLDNSILAPYDIDDDLSSDYESDDDNAESGEEGSLESENDDDNEASNEEEWASSTEAKSDASDNEDAVAAAEAHLKKVKAAVLRKLVPYKVEEFEKIVAGESESSESSKSNSNDTKSSDKSGCQLKKGDRVRYTGPSVQVTDEDRVILGKIPTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDINEDKVNEGEVENLSDDHTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLRRKQPLIVYFPDSSHWLHKSVPKSNRNEFFRKVEEMFDQLSGPIILICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEISKLFSNVLSIHPPKDENQLATFKKQLEEDKKIVTSRSNLSILRKVLEEHQLSCIDLLHLNTDGIVLTKLKAEKVVGWAKNHYLSSCLIPSVKGERLCLPRESLEIAVSRLTSQETMSRKSSQSLKNLAKDEFESNFISSVVPPGEIGVKFDDVGALEDVKKALHELVILPMRRPALFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILSIFLAQENLDSEFQLDKLANLTDGYSGSDLKNLCIAAAYRPVQELLENEKKEASNDGTTSILRPLNLDDFVQSKAKVGPSVAHDATSMTELRKWNEMYGEGGNRTKSPFGFGS 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 276 308 - -
Vium4335g00048 1043 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 169 1036 - -
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 93 119 - -
Vium4335g00048 1043 Gene3D - 921 1007 - -
Vium4335g00048 1043 Pfam ATPase family associated with various cellular activities (AAA) 789 919 IPR003959 GO:0005524|GO:0016887
Vium4335g00048 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 978 IPR027417 -
Vium4335g00048 1043 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 747 923 - -
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 358 393 - -
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 310 325 - -
Vium4335g00048 1043 Pfam AAA+ lid domain 944 977 IPR041569 -
Vium4335g00048 1043 Gene3D - 748 1024 IPR027417 -
Vium4335g00048 1043 SMART AAA_5 785 922 IPR003593 GO:0016887
Vium4335g00048 1043 ProSitePatterns AAA-protein family signature. 892 911 IPR003960 GO:0005524|GO:0016887
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 276 325 - -
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 362 378 - -
Vium4335g00048 1043 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00048 Vium-Chr4335 209281 228849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00048 748 980 Calmodulin-binding Proteins AT3G56690 39.407 7.43e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00048 - - gmx:100802939 1681