Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00046 ATGGGCAAGTCTAGCAAGAAATCAGCTGTTAAGGTTGATGCCGCTCCAGCTGTTGTTCCGCCGTCCAAATCCGCGAAAAAGGGAGGGAAGAGACAAGCTGAAGAAGAAAGTGAGAAGCAAGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAACAAAAGAAGGAAGCAAAGCTGCAGAAGAAGGAAAGCAGTTCTGATGATTCTTCATCAGATTCTGAAGATGAGAAACCTGCTGTGAAACCTGCTGCTCTTTCAAAAAAGGTACCCGCTAAAAATGGTGCTTTAAAAGCCCCTGCAAAGAAAGGAAAGCCAGTTTCCAGTTCTTCTGAATCATCTGAAGACGATTCTTCAGAATCTGAGGATGAGAAACCTGTGCCAAAAGCTGTTGTACCTGCACAAAAGGCTCCTGCTAAAAATGGTGCACCAGCAAAGAAAGGCAAGCCCGCTAGCAGCTCCAGTTCTTCGGAGGATTCTGAAGATGACTCCTCTGAAGAGGAGAAACCTGCTGCCAAGAATGGCTCTGTAACTGCCTCTGCAAAGAAAGGAAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTTATCTGAGGAATCCTCTGACGAGGATGATGTTCCAAAAACTAAGGCGGTCCCTGCTGCAGCAAAGAATATAACTTCTTCTAACAAGAAAACTCAGCCTAGTGGAAGTTCTGATTCTGATTCTGATAGCAGCTCTGATGAGGACGATAAAAAGAAAATACCTGCAACTACAAAGCTGCCTGCTTCATCAGTTGCTCCAGTTAAGAAAGTGGTAAGCTCAGACGATGATTCAAGTGAAGACTCTGATGAAGACGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTGCTGTGTCAAAGAAGAAAGTTGATAGTTCTGATTCTGATGATAGCAGCTCTGATGAAGACAATAAGAAGGCTGCCAAAAAGGTTTCCAATGCCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAGTAATAGTGATTCAGATGAAGAGGATTCTTCTGAAAGTGACTCTGAAGAGGAAAAGAAAACTGCAAAACTTGCTAATCTTAGCAAGAAACAAGCTGCTGTAGTGAAGACCCCTAAAAAAGGTTCTACTGAAAGTTCATCAGAGAGTGATTCTTCAGATGACGAGGGGAAGAAGATGGATATAGACGAAGATAGTTCTGATGAAAGTGAAAAGCCACAGAAGAAGGCTGTGAAAAATGTGAAAGAAAGCAGTGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGACGAACCCTCCAAAACACCGCAAAAAAGAGCTAGGGATGTGGAGATGGTAGATGCTGTTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAAAGCGGTGCTTCGAATACTCTTTTTGTTGGGAACCTAGCATACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCCAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATGAAGAAGGAAGGTTTAAAGGATTTGGACATGTAGAGTTCGCAACAGTTGAAGCTGCCCAGAAAGCTCTGGAGTTGAATGGAGAAGAATTATTGAATCGTCCACTGCGGCTGGATTCAGCCAAGTCCCGGGACAGGGGTGCTTATACTCCCAATAGCAACAATTGGAAAGACTCATCTCAGAGAAGTGGAAGAGGCCAGTCTCTTACCCTTTATGTAAGGGGTTTTGATAAAACAATTGGGGAAGATGCGATAAGAGCTAGTTTGGAGGAACATTTTGGTTCTTGTGGAGAGATTACAAGGGTGTCAATTCCGAAAGATTACGATACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCATAAGCAAAGCTCTAGAACTCCATGAAACTGACCTTGGTGGTTATACCCTCACAGTTGATGAAGCCAAGCCTAGGGAGCCTAGGGATAATCAAGCCTCTGGGGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGAGGTAGATTTGGAGGCAGTGGGGGAGGTAGATTTGGAGGCAGTGGTGGTGGCCGGTTTGGTGGAAGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCTCCAAATAGATCCATGGCGGAAGGCACAGGAAAAAAGACCAAGTTTGCCGATGAAGACTAG 2244 0.4532 MGKSSKKSAVKVDAAPAVVPPSKSAKKGGKRQAEEESEKQVIAKKQKIEEVAQKQKKEAKLQKKESSSDDSSSDSEDEKPAVKPAALSKKVPAKNGALKAPAKKGKPVSSSSESSEDDSSESEDEKPVPKAVVPAQKAPAKNGAPAKKGKPASSSSSSEDSEDDSSEEEKPAAKNGSVTASAKKGKPAAAASSSDLSEESSDEDDVPKTKAVPAAAKNITSSNKKTQPSGSSDSDSDSSSDEDDKKKIPATTKLPASSVAPVKKVVSSDDDSSEDSDEDDDVKPSATAVSKPAVSKKKVDSSDSDDSSSDEDNKKAAKKVSNAKSVPVSKQPVKTSSNSDSDEEDSSESDSEEEKKTAKLANLSKKQAAVVKTPKKGSTESSSESDSSDDEGKKMDIDEDSSDESEKPQKKAVKNVKESSDSSDDDSEEESEDEPSKTPQKRARDVEMVDAVSSGKKTPNTPITPNAESGASNTLFVGNLAYSVTRADVENFFQDCGEVVDVRLATDEEGRFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDSAKSRDRGAYTPNSNNWKDSSQRSGRGQSLTLYVRGFDKTIGEDAIRASLEEHFGSCGEITRVSIPKDYDTGAVKGFAYMDFGDADSISKALELHETDLGGYTLTVDEAKPREPRDNQASGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGSGRGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFADED 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00046 747 SMART rrm1_1 576 652 IPR000504 GO:0003723
Vium4335g00046 747 SMART rrm1_1 474 545 IPR000504 GO:0003723
Vium4335g00046 747 CDD RRM1_NUCLs 474 550 IPR034349 -
Vium4335g00046 747 Gene3D - 557 696 IPR012677 -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 548 569 - -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 27 84 - -
Vium4335g00046 747 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 305 620 - -
Vium4335g00046 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 549 IPR000504 GO:0003723
Vium4335g00046 747 MobiDBLite consensus disorder prediction 552 569 - -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 296 319 - -
Vium4335g00046 747 Gene3D - 386 556 IPR012677 -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 650 747 - -
Vium4335g00046 747 Coils Coil 34 65 - -
Vium4335g00046 747 CDD RRM2_NUCLs 576 654 IPR034350 -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 215 235 - -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 454 471 - -
Vium4335g00046 747 MobiDBLite consensus disorder prediction 434 451 - -
Vium4335g00046 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 543 IPR000504 GO:0003723
Vium4335g00046 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 588 649 IPR000504 GO:0003723
Vium4335g00046 747 MobiDBLite consensus disorder prediction 382 421 - -
Vium4335g00046 747 SUPERFAMILY RNA-binding domain, RBD 572 686 IPR035979 GO:0003676
Vium4335g00046 747 SUPERFAMILY RNA-binding domain, RBD 463 571 IPR035979 GO:0003676
Vium4335g00046 747 MobiDBLite consensus disorder prediction 1 471 - -
Vium4335g00046 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 575 656 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00046 Vium-Chr4335 199428 205677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00046 465 661 Eukaryotic Initiation Factors Gene Family AT2G36660 26.768 7.57e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00046 K11294 - gmx:100786132 465.307