Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00045 ATGGGCAAGTCTAGCAAGAAATCAGCTGTTAAGGTTGATGCCGCTCCAGCTGTTGTTCCGCCGTCCAAATCCGCGAAAAAGGGAGGGAAGAGACAAGCTGAAGAAGAAAGTGAGAAGCAAGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAACAAAAGAAGGAAGCAAAGCTGCAGAAGAAGGAAAGCAGTTCTGATGATTCTTCATCAGATTCTGAAGATGAGAAACCTGCTGTGAAACCTGCTGCTCTTTCAAAAAAGGTACCCGCTAAAAATGGTGCTTTAAAAGCCCCTGCAAAGAAAGGAAAGCCAGTTTCCAGTTCTTCTGAATCATCTGAAGACGATTCTTCAGAATCTGAGGATGAGAAACCTGTGCCAAAAGCTGTTGTACCTGCACAAAAGGCTCCTGCTAAAAATGGTGCACCAGCAAAGAAAGGCAAGCCCGCTAGCAGCTCCAGTTCTTCGGAGGATTCTGAAGATGACTCCTCTGAAGAGGAGAAACCTGCTGCCAAGAATGGCTCTGTAACTGCCTCTGCAAAGAAAGGAAAGCCAGCTGCAGCTGCAAGCTCTTCTGATTTATCTGAGGAATCCTCTGACGAGGATGATGTTCCAAAAACTAAGGCGGTCCCTGCTGCAGCAAAGAATATAACTTCTTCTAACAAGAAAACTCAGCCTAGTGGAAGTTCTGATTCTGATTCTGATAGCAGCTCTGATGAGGACGATAAAAAGAAAATACCTGCAACTACAAAGCTGCCTGCTTCATCAGTTGCTCCAGTTAAGAAAGTGGTAAGCTCAGACGATGATTCAAGTGAAGACTCTGATGAAGACGATGATGTCAAGCCCTCTGCAACTGCTGTGTCAAAGCCTGCTGTGTCAAAGAAGAAAGTTGATAGTTCTGATTCTGATGATAGCAGCTCTGATGAAGACAATAAGAAGGCTGCCAAAAAGGTTTCCAATGCCAAGTCAGTGCCTGTGTCTAAGCAGCCTGTTAAGACCTCAAGTAATAGTGATTCAGATGAAGAGGATTCTTCTGAAAGTGACTCTGAAGAGGAAAAGAAAACTGCAAAACTTGCTAATCTTAGCAAGAAACAAGCTGCTGTAGTGAAGACCCCTAAAAAAGGTTCTACTGAAAGTTCATCAGAGAGTGATTCTTCAGATGACGAGGGGAAGAAGATGGATATAGACGAAGATAGTTCTGATGAAAGTGAAAAGCCACAGAAGGCTGTGAAAAATGTGAAAGAAAGCAGTGACAGTTCAGATGATGATAGTGAGGAAGAAAGTGAGGACGAACCCTCCAAAACACCGCAAAAAAGAGCTAGGGATGTGGAGATGGTAGATGCTGTTTCATCCGGAAAGAAAACTCCCAATACTCCAATTACACCAAATGCAGAAAGCGGTGCTTCGAATACTCTTTTTGTTGGGAACCTAGCATACAGTGTTACCCGAGCTGATGTGGAAAATTTCTTCCAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATGAAGAAGGAAGGTTTAAAGGATTTGGACATGTAGAGTTCGCAACAGTTGAAGCTGCCCAGAAAGCTCTGGAGTTGAATGGAGAAGAATTATTGAATCGTCCACTGCGGCTGGATTCAGCCAAGTCCCGGGACAGGGGTGCTTATACTCCCAATAGCAACAATTGGAAAGACTCATCTCAGAGAAGTGGAAGAGGCCAGTCTCTTACCCTTTATGTAAGGGGTTTTGATAAAACAATTGGGGAAGATGCGATAAGAGCTAGTTTGGAGGAACATTTTGGTTCTTGTGGAGAGATTACAAGGGTGTCAATTCCGAAAGATTACGATACTGGTGCTGTCAAGGGGTTTGCTTACATGGACTTTGGTGATGCTGATAGCATAAGCAAAGCTCTAGAACTCCATGAAACTGACCTTGGTGGTTATACCCTCACAGTTGATGAAGCCAAGCCTAGGGAGCCTAGGGATAATCAAGCCTCTGGGGGAAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGGTTTGGTGGAAGAGGTGGCAGTGGAGGTAGATTTGGAGGCAGTGGGGGAGGTAGATTTGGAGGCAGTGGTGGTGGCCGGTTTGGTGGAAGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGAAGAGGCGGTGGTGGAAGAGGTCGTGGACCTCCAAATAGATCCATGGCGGAAGGCACAGGAAAAAAGACCAAGTTTGCCGATGAAGACTAG 2241 0.4534 MGKSSKKSAVKVDAAPAVVPPSKSAKKGGKRQAEEESEKQVIAKKQKIEEVAQKQKKEAKLQKKESSSDDSSSDSEDEKPAVKPAALSKKVPAKNGALKAPAKKGKPVSSSSESSEDDSSESEDEKPVPKAVVPAQKAPAKNGAPAKKGKPASSSSSSEDSEDDSSEEEKPAAKNGSVTASAKKGKPAAAASSSDLSEESSDEDDVPKTKAVPAAAKNITSSNKKTQPSGSSDSDSDSSSDEDDKKKIPATTKLPASSVAPVKKVVSSDDDSSEDSDEDDDVKPSATAVSKPAVSKKKVDSSDSDDSSSDEDNKKAAKKVSNAKSVPVSKQPVKTSSNSDSDEEDSSESDSEEEKKTAKLANLSKKQAAVVKTPKKGSTESSSESDSSDDEGKKMDIDEDSSDESEKPQKAVKNVKESSDSSDDDSEEESEDEPSKTPQKRARDVEMVDAVSSGKKTPNTPITPNAESGASNTLFVGNLAYSVTRADVENFFQDCGEVVDVRLATDEEGRFKGFGHVEFATVEAAQKALELNGEELLNRPLRLDSAKSRDRGAYTPNSNNWKDSSQRSGRGQSLTLYVRGFDKTIGEDAIRASLEEHFGSCGEITRVSIPKDYDTGAVKGFAYMDFGDADSISKALELHETDLGGYTLTVDEAKPREPRDNQASGGRGGGGRGGGGRFGGRGGSGGRFGGSGGGRFGGSGGGRFGGSGRGGGGRFGGRGGGGRGRGPPNRSMAEGTGKKTKFADED 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00045 746 MobiDBLite consensus disorder prediction 382 420 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 1 470 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 27 84 - -
Vium4335g00045 746 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 542 IPR000504 GO:0003723
Vium4335g00045 746 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 587 648 IPR000504 GO:0003723
Vium4335g00045 746 CDD RRM1_NUCLs 473 549 IPR034349 -
Vium4335g00045 746 Gene3D - 555 675 IPR012677 -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 296 319 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 453 470 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 547 568 - -
Vium4335g00045 746 Coils Coil 34 65 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 433 450 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 215 235 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 551 568 - -
Vium4335g00045 746 MobiDBLite consensus disorder prediction 649 746 - -
Vium4335g00045 746 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 574 655 IPR000504 GO:0003723
Vium4335g00045 746 CDD RRM2_NUCLs 575 653 IPR034350 -
Vium4335g00045 746 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 548 IPR000504 GO:0003723
Vium4335g00045 746 SUPERFAMILY RNA-binding domain, RBD 571 685 IPR035979 GO:0003676
Vium4335g00045 746 SUPERFAMILY RNA-binding domain, RBD 462 570 IPR035979 GO:0003676
Vium4335g00045 746 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 305 620 - -
Vium4335g00045 746 SMART rrm1_1 473 544 IPR000504 GO:0003723
Vium4335g00045 746 SMART rrm1_1 575 651 IPR000504 GO:0003723
Vium4335g00045 746 Gene3D - 384 554 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00045 Vium-Chr4335 199428 205677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00045 464 660 Eukaryotic Initiation Factors Gene Family AT2G36660 26.768 7.30e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00045 K11294 - gmx:100786132 464.536