Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00040 ATGGCGTGCAGAACTTCAAGCATAGCAAGTTTTGTTGTCACTACGTTGGTGTTGTTAGCCACAATATCTGATGCACAATTGTCTTCTAAGTTTTATGACAGTACGTGTCCCAATGCACTTTCCACCATCAGAACTGTCATTCGTACTGCAGTTTCCAAGGAACGCCGCATGGCTGCATCTCTCATTCGTCTTCATTTTCATGACTGTTTTGTTCAGGGTTGTGATGCATCGATTTTGCTTGATGATAGCCCCTCCATCGAGAGCGAAAAGACTGCACCTCAGAACTTTAACTCAGTAAGAGGATTTAATGTCATCGATGAAGCAAAAACTGAGGTGGAGAAAGTGTGTCCAGGAGTTGTATCATGTGCAGACATTGTGGCAGTAGCTGCTCGTGATGCATCATTTGCTGTGGGTGGTCCATCATGGACTGTGAAACTTGGAAGAAGAGATTCTACCACAGCAAGCAAAAGTGAAGCTACCAGTGACCTTCCACTTTTCACAGACGATCTTGACATTCTTATTTCTAGATTCGAAAAGAAGGGACTCACTGCAAAAGACATGGTTACTCTGTCTGGTTCTCACACAATTGGACAAGCTCAGTGTTCGACATTCCGTGGAAGGATTTACAACAATGCAAGTGATATTGATGCTGGATTTGCAAGCACCCGCCAACGGGGTTGTCCATTAGTTGTCAGTGATGATAATGACAAGAAATTGGCAGCACTAGACTTGGTGACACCTAATTCATTTGACAACAACTACTTCAAGAATTTGATTCAGAAGAAGGGTCTTCTTCACTCAGATCAAGTTCTATTCAGTGGAGGCTCTACAGATTCTATTGTGTCCGAATACAGCAAAAATCCTACAACTTTTAAGTCTGACTTTGCAGCTGCTATGATCAAAATGGGAGATATTGAACCATTAACCGGATCAGCTGGAATCATCAGAAAGATTTGCAGCTCTGTCAACTAA 972 0.4249 MACRTSSIASFVVTTLVLLATISDAQLSSKFYDSTCPNALSTIRTVIRTAVSKERRMAASLIRLHFHDCFVQGCDASILLDDSPSIESEKTAPQNFNSVRGFNVIDEAKTEVEKVCPGVVSCADIVAVAARDASFAVGGPSWTVKLGRRDSTTASKSEATSDLPLFTDDLDILISRFEKKGLTAKDMVTLSGSHTIGQAQCSTFRGRIYNNASDIDAGFASTRQRGCPLVVSDDNDKKLAALDLVTPNSFDNNYFKNLIQKKGLLHSDQVLFSGGSTDSIVSEYSKNPTTFKSDFAAAMIKMGDIEPLTGSAGIIRKICSSVN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00040 323 SUPERFAMILY Heme-dependent peroxidases 26 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 ProSiteProfiles Plant heme peroxidase family profile. 26 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Vium4335g00040 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vium4335g00040 323 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 Gene3D Peroxidase, domain 2 164 302 - -
Vium4335g00040 323 PANTHER PEROXIDASE 72-RELATED 22 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 CDD secretory_peroxidase 26 322 IPR033905 GO:0004601|GO:0042744
Vium4335g00040 323 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium4335g00040 323 FunFam Peroxidase 164 302 - -
Vium4335g00040 323 Gene3D - 30 320 - -
Vium4335g00040 323 FunFam Peroxidase 30 168 - -
Vium4335g00040 323 Pfam Peroxidase 44 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00040 Vium-Chr4335 173779 175564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00040 11 323 Peroxidase AT1G14550 68.254 1.09e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00040 K00430 - gmx:100811641 554.673