Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00039 ATGCAGGATAATTGTATTGAAAGCTCATATATTGAGAATACAATGATGGGAAATGATGGTGCAATGTTTGAAACCAAGTGTAGGTATGATGTTTTCCTTAGTTTTAGGGGAGAAGACACTCGTCTCACATTCACTTGTCATCTCTATCATGCTTTGTGTCGGAAGGGAATTATCACCTTCATGGATGATGGAGAACTCAAGCTTGGAGAGCAGATTGGTCCAACACTTCTTAGGGCAATTGAAGAATCGAGCATCTCAATTGTTGTTTTATCAGAAAATTATGCAGATTCTTCATGGTGCCTTGATGAACTCGTGAAGATCCTCGAGTGTAAGGAGTCAAAAAACCAGCTAATTTGGCCAATCTTCTACAAAGTGAATCCCTCAGATGTGAGACATCAGAATGGAAGTTATGGTGAGGCCATGACTAAGCATGAAAAAATGTTTGGAACAGGCTCAGAGAAGGTGCTCCAATGGAGGTCAACCTTGAATGTCATAGCCGATATGACAGGAGAGCATCTGAAATCTGAACAAGGGAGAGATGAATCCAAGTTTATAGAAGAACTTGTTAGCAAGATTTTCATGATAGTGTCTCCTAAATATTTGTCAAGTGATGAGCATATAGTAGGACGAGAGTATCGAGTTAAAGAACTGAAATCACTTCTAAACCTTGAGTCTCCTAATATCACATTGTTAGGGATTCATGGAACAGGTGGAATTGGCAAAACCACACTTGCCAAAGCTTTGTATGACTCCATTTACAAGCAGTTTGAGCGTTCATGTTTTCTTTTCAACGTTAGAGAAAATTCAAATCAAATTAATGGTATAGAATTTCTGCAACAAAGGCTTCTATCAGAGATCCTTGAGGACAGTAAAATTCAGCTGGCAAGTAAAGCAGAAGGAACCAACAGAATAAAACGCAGTCTATATTCAAAAAGAGTTCTCATAGTTCTTGATGATGTTGATGACATTGAACAGTTTAAAAATTTGGCAGGGAAAAGATTTTGGTATGGTAAGGGGAGCAGAATCATTGTAACAACAAGAGATAAACAATTACTTGATGTTGGTAGGATCAACAACAGATATGAAGTGAAAGTGCTAAACAACCAAGAGTCTCTGGAACTCTTCTGTCAAAGTGCCTTTGGAAACAGTTGTCCCGAAACAAACTATGAAGATCTGTCAAATCGTGCAATAGGCTGTTGCAAAGGCCTTCCACTGGCCTTAAAAGTTCTGGGCTCCCATATGATTGGAAAAGATTTTGTTGGATGGGAGGATGCGTTAAAAAGATATGGAAAGAGTCCACATCGAGATGTTCAAAAAGTTCTCAGAATAAGCTATGATAGCTTGCCCTTCAATGAGAAAAACATTTTTCTCGACATTGCATGCTTCTTCAAAGGGCAAAGATCAGAATATGTAAAGAGAGTATTGGATGCATGTGACTTCAACTCAGGAGATGGAATTGATACATTAGTTAATAAATCTTTATTAACTGTTGACAGCCAAAACAAATGTTTGGAGATGCATGACCTGATACAAGACATGGGTAAAGAGATTGTCAAAGAGGAATCATGGACTGAAATTGGTGAACGCAGCAGATTGTGGTTTCACGAAGATGTTCTTCAAGTACTTGCTGATGATATGGGAAGTGGGAAGATTCAAGGACTAATGCTTGATCCCCCTCACAGAGAAGAAATTAATTGTACTGAAACTGTATTTGAGAAGATGAAGAATGTTAGAATTCTCATTGTTCGTAATACGAGCTTTTCACATGAGCCTAGTTATCTCCCAAATAACTTAAGGCTACTTGATTGGAAGAATTACCCTTCACAATCCTTCCCTTCAGAATTTTATCCCAGGAAAATTGGGGCATTCAATTTAAGTAGAAGTCCTGTACTCGCACTGGAAGAACCATTTAAGGTACAGGTGTGNCGCAGCAGATTGTGGTTTCACGAAGATGTTCTTCAAGTACTTGCTGATGATATGGGAAGTGGGAAGATTCAAGGACTAATGCTTGATCCCCCTCACAGAGAAGAAATTAATTGTACTGAAACTGTATTTGAGAAGATGAAGAATGTTAGAATTCTCATTGTTCGTAATACGAGCTTTTCACATGAGCCTAGTTATCTCCCAAATAACTTAAGGCTACTTGATTGGAAGAATTACCCTTCACAATCCTTCCCTTCAGAATTTTATCCCAGGAAAATTGGGGCATTCAATTTAAGTAGAAGTCCTGTACTCGCACTGGAAGAACCATTTAAGAGATTTCAGCTTTTGACTTATATGAATATATCTTATTGTAATATGGTTACTGAATTTCCCGATGTGTCTGGGGCCAAAAATTTAAGAGAATTGAGACTCGATGGATGCGAGAAACTGGTTACTATTCATGAATCAGTTGGACTTCTCGCTAACCTTGTTTTTCTAAGTGCTTCAGAATGCATCCTACTCTCAAAGTTTGTGCCAACAATGTATTTGCCTTCTCTCGAATACCTTTCCTTAAACCTCTGCATAAAACTAGCATTCTTCCCAGAGATCAGTGGAACGATGAACAGCAAATTGAAGATTAATATGTTGGATACAGCTATTACCGAGCTTCCAGAATCAATTGAGAAACTTACTGGGCTTAACTATCTTGACATGACAGATTGCAAGGAACTTCAACATATACCAGGTAGCTTATTTATGTTGCCAAATTTTGTCACATTAAAAATTGGAGGATGTCGTCGGCTTCGAGAGTCATTTACAAGGTTCAAAGGAAGTCATTCAGTTCGCCCAAAACTTGAGACATTACATTTCGACAATGCTGATCTATCAGAGAAAGATGTTCGTACGATTATTTACCATTTTCCTAACTTGAAAGACTTAAATATATCGTGCAACCCAGTTGTGTATCTCCCAGCATGCATTAAAGAATCTACTAACTTGACAAGTCTTCACCTGAGGTATTGTGATGTGCTTCAAGAAATTCCAGAACTGCCGTCAAGAGTTCAGAAAGTAGATGCAAAATACTGCTATTCCTTAAGTTCGAAGTCATCAAACATCTTGTGGAGTCAGGTCCGTAAAGAAATGAAAAGATTAGAAGTGGGGATGCCAGAAAGTGACATTCCAGAATGGTTCGACCATGTTAATGAGGGAGGGTTTCCTGTTTTCACTGCCCGTAGAAAGTTCCCAGCTGTTGTTCTAGCTTTAGTGTTTGGTGTAGTGGATGCCAAAGCCGACAGAGAAATAATGGAAGGTCGCTGGAGAACTGTCGGAATGCACTTATTCATTGAAGGTGAACGCAGACGGTACCATAATTTCAGCGTGGCCGAGAATCATGTGTTGCTGTGTAACCTACGAGTTTTGTTCAGTTTGGAGGAATGGGAGGATGTAGGATTTGGGGTTGATGAGGATTGGAAGACCGTACAAGTTTTCTGTGAAACAAATTTGAGTCTATGTTCATGGGGAGTGTATGTCTACAAAACTGAGACCAACATGGATGACATCAACTTCATGACTCAACATCCAAGTTCCTCTTTGGTGTTGAGTCGTCACAAGATGATCAGTGATATGGATAAAATAGAAAGCAAGATAATAAGTTTGAATATACCACAAATGCATAGGGAGTTTCATATGTGGAGCACTGCAGCTCGAAAACTCCGCTCTTTTAAAGGTGAAAGTAGTCGAGTGTTGGAAAAAGCATCGAGAAGGGTCATGGCCTTGAGAGGGGAGGAAGGAAGATCAGGAATGAACATTGAAGACGAGAGGGACAAGGAGTTGGATGCGCAGTTGGATATGCTGGCAACTGCAGAACTTGATAAACATTTTCATTATCCTAACAATCACACTGCTGAACCCTTTACTTCACAATATTGCCGTATACTTTGA 3864 0.3918 MQDNCIESSYIENTMMGNDGAMFETKCRYDVFLSFRGEDTRLTFTCHLYHALCRKGIITFMDDGELKLGEQIGPTLLRAIEESSISIVVLSENYADSSWCLDELVKILECKESKNQLIWPIFYKVNPSDVRHQNGSYGEAMTKHEKMFGTGSEKVLQWRSTLNVIADMTGEHLKSEQGRDESKFIEELVSKIFMIVSPKYLSSDEHIVGREYRVKELKSLLNLESPNITLLGIHGTGGIGKTTLAKALYDSIYKQFERSCFLFNVRENSNQINGIEFLQQRLLSEILEDSKIQLASKAEGTNRIKRSLYSKRVLIVLDDVDDIEQFKNLAGKRFWYGKGSRIIVTTRDKQLLDVGRINNRYEVKVLNNQESLELFCQSAFGNSCPETNYEDLSNRAIGCCKGLPLALKVLGSHMIGKDFVGWEDALKRYGKSPHRDVQKVLRISYDSLPFNEKNIFLDIACFFKGQRSEYVKRVLDACDFNSGDGIDTLVNKSLLTVDSQNKCLEMHDLIQDMGKEIVKEESWTEIGERSRLWFHEDVLQVLADDMGSGKIQGLMLDPPHREEINCTETVFEKMKNVRILIVRNTSFSHEPSYLPNNLRLLDWKNYPSQSFPSEFYPRKIGAFNLSRSPVLALEEPFKVQVXRSRLWFHEDVLQVLADDMGSGKIQGLMLDPPHREEINCTETVFEKMKNVRILIVRNTSFSHEPSYLPNNLRLLDWKNYPSQSFPSEFYPRKIGAFNLSRSPVLALEEPFKRFQLLTYMNISYCNMVTEFPDVSGAKNLRELRLDGCEKLVTIHESVGLLANLVFLSASECILLSKFVPTMYLPSLEYLSLNLCIKLAFFPEISGTMNSKLKINMLDTAITELPESIEKLTGLNYLDMTDCKELQHIPGSLFMLPNFVTLKIGGCRRLRESFTRFKGSHSVRPKLETLHFDNADLSEKDVRTIIYHFPNLKDLNISCNPVVYLPACIKESTNLTSLHLRYCDVLQEIPELPSRVQKVDAKYCYSLSSKSSNILWSQVRKEMKRLEVGMPESDIPEWFDHVNEGGFPVFTARRKFPAVVLALVFGVVDAKADREIMEGRWRTVGMHLFIEGERRRYHNFSVAENHVLLCNLRVLFSLEEWEDVGFGVDEDWKTVQVFCETNLSLCSWGVYVYKTETNMDDINFMTQHPSSSLVLSRHKMISDMDKIESKIISLNIPQMHREFHMWSTAARKLRSFKGESSRVLEKASRRVMALRGEEGRSGMNIEDERDKELDAQLDMLATAELDKHFHYPNNHTAEPFTSQYCRIL 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00039 1287 Gene3D - 445 516 IPR036388 -
Vium4335g00039 1287 Pfam NB-ARC domain 211 446 IPR002182 GO:0043531
Vium4335g00039 1287 Gene3D - 26 197 IPR035897 -
Vium4335g00039 1287 FunFam Disease resistance protein (TIR-NBS-LRR class) 25 197 - -
Vium4335g00039 1287 SUPERFAMILY Toll/Interleukin receptor TIR domain 24 170 IPR035897 -
Vium4335g00039 1287 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 630 IPR044974 GO:0006952
Vium4335g00039 1287 Gene3D Ribonuclease Inhibitor 853 1027 IPR032675 -
Vium4335g00039 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 459 IPR027417 -
Vium4335g00039 1287 SUPERFAMILY "Winged helix" DNA-binding domain 436 542 IPR036390 -
Vium4335g00039 1287 Gene3D - 198 358 IPR027417 -
Vium4335g00039 1287 Gene3D Ribonuclease Inhibitor 550 852 IPR032675 -
Vium4335g00039 1287 PRINTS Disease resistance protein signature 869 885 - -
Vium4335g00039 1287 PRINTS Disease resistance protein signature 307 321 - -
Vium4335g00039 1287 PRINTS Disease resistance protein signature 230 245 - -
Vium4335g00039 1287 PRINTS Disease resistance protein signature 400 414 - -
Vium4335g00039 1287 SMART till_3 28 168 IPR000157 GO:0007165
Vium4335g00039 1287 Pfam TIR domain 29 196 IPR000157 GO:0007165
Vium4335g00039 1287 ProSiteProfiles TIR domain profile. 27 196 IPR000157 GO:0007165
Vium4335g00039 1287 Gene3D - 365 444 IPR042197 -
Vium4335g00039 1287 SUPERFAMILY L domain-like 668 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00039 Vium-Chr4335 168647 173599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00039 643 944 WRKY Transcription Factor Family AT4G12020 33.962 6.88e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00039 - - vum:124837712 2564.26