Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00029 ATGGTTTTCACAGACAATGACAGTGCAAATGCAAGTGAAATATATAAAGCTCAAATGCACGTGCACAAATATCTCCTCAGTTTCCAAAGCTGCATGGCGGTGAAGTTTGCGACGGAGCTAGGCATAGCCGACGCAATCCACCGTCACGGAAAACCTATCACTCTCTCCGGCTTGGCCTCAGCTCTGAATCTGCCGCCTTCAAAAGTCGGTGTTCTCCATCGCTTCATGCGCCTTCTAACACACAACGGCTTCTTCACGAAAACACCTTCACAGAACTCTGAAGAAGAAGAAGAAACATATTCTTTGACTCTTGCATCAAAGTTTCTCGTCAGAAGCAACTCCTTCTGCTTGGCACCCAATGCGGAAGTAGCGTTTCATCCAAGTATGTTTAACATGTGGAACTCCTCCAAGAAACTGTTTACAGAAGATACTCAAGTTCCGTTGTTCGAGAGCGTAACAGGAGAGAGTTACTTTGACTTCATCAAAAATGATTTTCAGTTTCTGAATGTATTTCAGAAGGCTGTGGCAGCTGATTCTGAAATGGTCAAACTGGGTCTCCAACAATGCAAGCACGTGTTTGAGGGGTTGGATTCTCTTGTCGACGTGGGAGGTGGCACTGGTGCTGTCTCCAGGCTCATACTCGAATCCTTTCCTCACATGAAATGCACCGTCCTTGACCTACCACAAGTTGTGGCCAATTTGAAAACAACCCAAAATCTGAGTTTTGTTGGTGGTGACATGTTTGAATCGATTCCTTCTGCCGATGCAGTTTTACTCAAGTGGGTTCTGCATAATTGGGATGATGAACTTTCTATAAAGATACTGAAGAACTGCAAAGAAGCGATTTCTGGGAAAGGGAAGGAGGGAAAGGTGATAATCATAGACGTGGTGATTGATGAAGCAGGTGATGATCGAGATTTGACTGAGCTGAAGCTGAACTTTGACTTGGCGATGTTGACTCTCTTGAATGGAAAAGAAAGAGAGAAGAAAGAATGGGAGAAACTTATATACCAGGCTGGCTTCACCAGCTGCAAGTTTACTCCAGTATTTGGCTTCAAATCTCTCATCGAAGTTTATCCATGA 1083 0.4423 MVFTDNDSANASEIYKAQMHVHKYLLSFQSCMAVKFATELGIADAIHRHGKPITLSGLASALNLPPSKVGVLHRFMRLLTHNGFFTKTPSQNSEEEEETYSLTLASKFLVRSNSFCLAPNAEVAFHPSMFNMWNSSKKLFTEDTQVPLFESVTGESYFDFIKNDFQFLNVFQKAVAADSEMVKLGLQQCKHVFEGLDSLVDVGGGTGAVSRLILESFPHMKCTVLDLPQVVANLKTTQNLSFVGGDMFESIPSADAVLLKWVLHNWDDELSIKILKNCKEAISGKGKEGKVIIIDVVIDEAGDDRDLTELKLNFDLAMLTLLNGKEREKKEWEKLIYQAGFTSCKFTPVFGFKSLIEVYP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00029 360 FunFam Coniferyl alcohol 9-O-methyltransferase 4 109 - -
Vium4335g00029 360 SUPERFAMILY "Winged helix" DNA-binding domain 12 113 IPR036390 -
Vium4335g00029 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 360 IPR016461 GO:0008168
Vium4335g00029 360 PANTHER O-METHYLTRANSFERASE 26 345 IPR016461 GO:0008168
Vium4335g00029 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 359 IPR029063 -
Vium4335g00029 360 Pfam O-methyltransferase domain 141 341 IPR001077 GO:0008171
Vium4335g00029 360 CDD AdoMet_MTases 199 298 - -
Vium4335g00029 360 PIRSF O-mtase 2 360 IPR016461 GO:0008168
Vium4335g00029 360 Gene3D - 3 109 IPR036388 -
Vium4335g00029 360 FunFam O-methyltransferase ZRP4 112 360 - -
Vium4335g00029 360 Gene3D Vaccinia Virus protein VP39 111 360 IPR029063 -
Vium4335g00029 360 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00029 Vium-Chr4335 103602 104984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00029 32 345 Monolignol Biosynthesis Gene Families AT5G54160 32.508 5.07e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00029 K22588 - gmx:106795493 478.404