Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00028 ATGGCTTTTTTGTGGTTCTATATTGCTGTTTTGTCTGGGACTATTTTTTCAGCTCAATTCTCTGTTTTCGAGCAAGCGTATTCAGCCGGTGAGAGACGAATGGAGGACGATAAAGTGACAGATTTACCTGGACAACCAGTAGTAAACTTCAATCACTATGCTGGTTACGTGAAGTTAAGACGAGAAGAAAAGAAAGCACTATTTTACTGGTTCTTCGAAGCTCAAGAGGCTTCATCGCATAAACCTCTCGTGCTTTGGCTAACTGGAGGACCTGGTTGTTCGTCTGTTGCTTTTGGAGCAGCACAAGAGATTGGTCCATTTCGTGTAGACGACCATCAGCGTATTACCTTCAACAAATTCTCCTGGAACAGAGTTGCCAATATCATATTCTTGGAATCACCGATTAGTGTGGGTTTTTCTTACACTAATAATTCCGATGACTTAAGCAAGCTCGGTGATCAAGTGGTTGCTCTTGATAACTATGCCTTCTTGCTTGGTTGGTTTAAGAGATTTCCAAGATTCAAATCCCATGAATTTTATATCGTAGGAGAGAGCTATGGAGGACATTATGCTCCACAGTTGGGTGAGGTTATACATGAAAGGAACAAAAATGGCCCTTACATTAATCTTGAAGGGATTATGATGGGAAACCCTGTGATTAACGATGTGACAGACTTGAAAGGCATATTTGATTTTGCTTTCTATCATGCCATAATTTCAAAGCAAGTATATGATGGCATAAGAGAGAAATGTGATTTCATGACAAAAAACAATACAAAGGAATGTAGTTGGATCGTGGCCAAATTCGTAAAGGCCTATTCTGACATAGATGTATTTAGTATTTACTCTCCTGTCTGTCTGTTGGACTATGAAAGACCAGTTTCAAGTATGTTTGATGGTATCCCGTATGACCTCCGGAATATGATTCCGACAATGGCTTACGATCCATGTAAAGCTAACGACGTGGAGAAGTATTTCAACAGGAAGGATGTCCAGAAGGCCATTCATGCATACCTCCCTGACATGTTTGATCCCTACACGATATGCAGCACTAAAATTAAAAAATGGAATGATTCGCCAAGCACAGTTCTTCCAGTGATTCAGAAACTACTACATGCTGGTTTACGCATTTGGATGTACAGTGGAGACAGTGATGGTAGAGTTCCATGGTTATCAACGAGATACAGTTTGGAAGAGCTTGAAGTGAATGTGACAAGAGAATGGAGAGCTTGGTTTGAAGGAAGAGAAGTTGGAGGATGGGTAGAGGAGTACGAGGGTGGTCTCACTTTTGCCTCCATTAGAGGTGCTGGTCATCAAGCTCCTATATTTATAACACGAGAAGCTTTTCTTCTCTTCTACCATTTCCTTTCTGTCAATCGCTTCCTTCTTCTACCTTCTGATTCTTCCATCTGTAAATTGTCATCTTTTTACATTTATTACTCCAAGAGAAATTGTCATTTTACAGAATATATATGTTTTTTACATGTCTCAGTCTATTATTAG 1503 0.3985 MAFLWFYIAVLSGTIFSAQFSVFEQAYSAGERRMEDDKVTDLPGQPVVNFNHYAGYVKLRREEKKALFYWFFEAQEASSHKPLVLWLTGGPGCSSVAFGAAQEIGPFRVDDHQRITFNKFSWNRVANIIFLESPISVGFSYTNNSDDLSKLGDQVVALDNYAFLLGWFKRFPRFKSHEFYIVGESYGGHYAPQLGEVIHERNKNGPYINLEGIMMGNPVINDVTDLKGIFDFAFYHAIISKQVYDGIREKCDFMTKNNTKECSWIVAKFVKAYSDIDVFSIYSPVCLLDYERPVSSMFDGIPYDLRNMIPTMAYDPCKANDVEKYFNRKDVQKAIHAYLPDMFDPYTICSTKIKKWNDSPSTVLPVIQKLLHAGLRIWMYSGDSDGRVPWLSTRYSLEELEVNVTREWRAWFEGREVGGWVEEYEGGLTFASIRGAGHQAPIFITREAFLLFYHFLSVNRFLLLPSDSSICKLSSFYIYYSKRNCHFTEYICFLHVSVYY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00028 500 Gene3D - 363 457 - -
Vium4335g00028 500 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Vium4335g00028 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 Gene3D - 317 353 - -
Vium4335g00028 500 Pfam Serine carboxypeptidase 44 457 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 SUPERFAMILY alpha/beta-Hydrolases 33 457 IPR029058 -
Vium4335g00028 500 Gene3D alpha/beta hydrolase 33 288 IPR029058 -
Vium4335g00028 500 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 441 IPR001563 GO:0004185|GO:0006508
Vium4335g00028 500 FunFam Carboxypeptidase 363 458 - -
Vium4335g00028 500 FunFam Carboxypeptidase 33 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00028 Vium-Chr4335 92026 100021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00028 349 457 Calmodulin-binding Proteins AT2G22960 29.358 8.32e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00028 K16297 - gmx:100799746 586.645