Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00019 ATGGCTTTGTCGTCACTTATTTCCAATATTCTTCTTCTCCTCCTTTTCTCTTTCACCAAAGAAGCTTTATCTGTGTCAAAGCTTTCAGTAACCGATAATGATAATTACGTTAGCCGGGAAACACTGGCAGAACAAGAAGCCGATAGAGTTTACGGATTACCAGGGCAACCACCGGTGAAATTCAAGCAATACGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTTTATTGGTTCTTTGAAGCCACTCACAAACCAGAAGAAAAACCAGTTCTATTATGGCTCAATGGAGGCCCAGGTTGTTCCTCAATCGGTTATGGAGAAGCAGAGGAATTAGGACCCTTCTTTCCCCAGGACAGTAGCCAGCCAAAGCTAAAGTTGAACCCTTATTCATGGAACAATGCTGTGAATCTTCTGTTTTTGGAAAGCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAGTGACATAATTGAGCTTGGTGACAGCATTACTGCTAAAGATTCACACATCTTTATCATCAAGTGGTTTAGGAGGTTCCCACAATTCAGATCACACAAGTTCTACATTGCCGGTGAAAGCTATGCAGGGCACTATGTTCCACAACTTTCTGAGCTTATCTTCGATAACAATCTCAACCATGCTGAAAAAGACTACATTAACTTCAAAGGTTTTCTGATTGGAAATGCATTATTGGACGACGAAACAGATCAAAAGGGTATGATAGATTATGCATGGGATCATGCAGTGATATCGGATGCACTATACCACAACATCACAGCCATATGCGATTTCAATCATCCAATTCAGAACCAGACAGACGAATGCAACACGGAACTGAATAAGTACTTCGATGTGTATAAGATTATTGACATGTATAGCTTGTACACTCCCAGGTGTTTCAGCAACCTCAGCAGCACCTCCACAAACGAAGCCTCTCAAACTTCTTCCAGAATTAATAGGTGGCAAAGAAAACGAGCTGGATATGATCCCTGTGCATCCGATTACACTGAAGTTTACTTGAACAGACCAGAAGTCCAAAAGGCACTGCATGCCAATGTCACAAAAATTCCCTATCCATGGACTCACTGCAGTGATAACATCACATTCTGGAATGACTCACCACAGACCATTCTTCCTGTCCTCAAAAAGCTCGTTGCTGGTGGTCTTCGCATCTGGGTTTACAGTGGAGACACTGATGGAAGAATTCCAGTAACAGCAACAAGATACACACTGAGAAAATTGGGACTTGGCATTGTGGAGGATTGGAGTCCATGGTATACTAGCCGTCAGGTGGGAGGATGGAGCATCGTGTACGATGGACTTACTTTTGTTACCATAAGAGGTGCTGGCCATCAAGTTCCAACTTTCACTCCCAAGCAAGCTCTGCAGCTACTTCAACACTTCATAGATAATAAGAAATTACCATCTCGACCAATTTAA 1455 0.4268 MALSSLISNILLLLLFSFTKEALSVSKLSVTDNDNYVSRETLAEQEADRVYGLPGQPPVKFKQYAGYITVNETHGRALFYWFFEATHKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSSQPKLKLNPYSWNNAVNLLFLESPVGVGFSYTNTSSDIIELGDSITAKDSHIFIIKWFRRFPQFRSHKFYIAGESYAGHYVPQLSELIFDNNLNHAEKDYINFKGFLIGNALLDDETDQKGMIDYAWDHAVISDALYHNITAICDFNHPIQNQTDECNTELNKYFDVYKIIDMYSLYTPRCFSNLSSTSTNEASQTSSRINRWQRKRAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYPWTHCSDNITFWNDSPQTILPVLKKLVAGGLRIWVYSGDTDGRIPVTATRYTLRKLGLGIVEDWSPWYTSRQVGGWSIVYDGLTFVTIRGAGHQVPTFTPKQALQLLQHFIDNKKLPSRPI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00019 484 Gene3D - 336 373 - -
Vium4335g00019 484 ProSitePatterns Serine carboxypeptidases, histidine active site. 446 463 IPR033124 GO:0004185
Vium4335g00019 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 446 459 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 Gene3D - 382 475 - -
Vium4335g00019 484 FunFam Carboxypeptidase 382 476 - -
Vium4335g00019 484 Pfam Serine carboxypeptidase 54 476 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vium4335g00019 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 463 IPR001563 GO:0004185|GO:0006508
Vium4335g00019 484 SUPERFAMILY alpha/beta-Hydrolases 45 481 IPR029058 -
Vium4335g00019 484 Gene3D alpha/beta hydrolase 44 306 IPR029058 -
Vium4335g00019 484 FunFam Carboxypeptidase 44 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00019 Vium-Chr4335 65289 70656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00019 344 479 Calmodulin-binding Proteins AT2G22960 29.927 1.49e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00019 K16297 - gmx:100797264 857.825