Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4335g00017 ATGTCTTTGTCTTCACTTATTTCCAATATTGTTCTTCTGCTTCTTTTCTCTTTCAACAAAAAAGCTTTAGCTGTGTCAAAGCTTTCAGTAACTGACAATTATAATTATGTTAGCCGGGAATTACTGGCAGAACAAGAAGCTGATAGAGTTTATACATTACCAGGGCAGCCACCAGTGAAATTCAAACATTATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCATTGTTTTATTGGTTCTTTGAAGCCACTTTCAAACCAGAGGAAAAACCAGTTTTATTGTGGCTAAATGGAGGTCCAGGTTGTTCCTCAATCGGTTATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCCCAGAACAGTAGCCATCCACAGCTAACGTTGAACCCTTATTCATGGAACAATGCTGCCAATCTTTTGTTTTTGGAAAGCCCTGTCGGAGTGGGATTCTCCTACACCAACACCAGCAGAGATTTGTACGAGCTCGGTGACGCCATTACTGCTAAGGATTCACACACCTTCATAGTCAAGTGGTTTAGAAGATTTCCACAATTCAGATCACACGAGTTCTACATTGCTGGCGAAAGCTATGCAGGGCACTACGTTCCACAATTGTCCGAGCTCATTTTCGATCACAATAGAAATCGTGCCAAGAAAGACTACATCAGATTCAAAGGATTCATGATTGGAAATGCAGCAATTGACGACGAATCAGATCAGAAGGGTTTGGTAGAGTATGCCTGGTATCATGCAGTGATATCCGATGGCTTATATCAGAACATTACAACAAATTGCAATTTCAAATTTGAAAATCAAACAGATGAATGCAATCGCTATGTGGATGAGTTATTCGTTGCGTATGACGTTATTGACTTATACAGCTTGTACACTCCCACGTGTGTCAGCGACGTCAACAGCACAGCCCCTGTCGTCAGAGGCACAACCCAAAAATCTTTTTCCAAAATTAATAAGTGGCATAGAAGACCAGAAGGATATGATCCCTGTGCATCCGATTACACTGAATTTTACCTAAACAGGCCAGAAGTCCAAAGGGCACTACATGCCAATGTCACCAAAATTTCCTATTCATGGAGTCACTGCAGTAACGCTATCCAGGTTTGGAATGACTCGCCAGCATCCATTCTTCCTGTCATCAAGAAACTTGCTGCTGGTGGTCTGCGCATTTGGGTTTACAGTGGAGATACTGATGGAAGATGTCCTGTGACTGGAACAAGATACGCTTTGAAAAAGTTGGGGCTCCCCATTGTTGAAGATTGGACTCCCTGGTATACTAGCCAACAGGTTGGAGGATGGAGAACGATTTACGATGGGCTTACTTTTGTGACCATAAGAGGTGCTGGCCATGAAGTTCCGACCTACACTCCCAAACCAGCTCTGCAGCTGCTCCGACACTTCCTTGCAAATAAGAAATTACCATCTCAACCGATTTAA 1458 0.4273 MSLSSLISNIVLLLLFSFNKKALAVSKLSVTDNYNYVSRELLAEQEADRVYTLPGQPPVKFKHYAGYITVNETHGRALFYWFFEATFKPEEKPVLLWLNGGPGCSSIGYGEAEELGPFFPQNSSHPQLTLNPYSWNNAANLLFLESPVGVGFSYTNTSRDLYELGDAITAKDSHTFIVKWFRRFPQFRSHEFYIAGESYAGHYVPQLSELIFDHNRNRAKKDYIRFKGFMIGNAAIDDESDQKGLVEYAWYHAVISDGLYQNITTNCNFKFENQTDECNRYVDELFVAYDVIDLYSLYTPTCVSDVNSTAPVVRGTTQKSFSKINKWHRRPEGYDPCASDYTEFYLNRPEVQRALHANVTKISYSWSHCSNAIQVWNDSPASILPVIKKLAAGGLRIWVYSGDTDGRCPVTGTRYALKKLGLPIVEDWTPWYTSQQVGGWRTIYDGLTFVTIRGAGHEVPTYTPKPALQLLRHFLANKKLPSQPI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4335g00017 485 Pfam Serine carboxypeptidase 54 477 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 49 464 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Vium4335g00017 485 FunFam Carboxypeptidase 383 477 - -
Vium4335g00017 485 SUPERFAMILY alpha/beta-Hydrolases 45 480 IPR029058 -
Vium4335g00017 485 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Vium4335g00017 485 Gene3D - 337 374 - -
Vium4335g00017 485 Gene3D alpha/beta hydrolase 44 304 IPR029058 -
Vium4335g00017 485 Gene3D - 383 476 - -
Vium4335g00017 485 FunFam Carboxypeptidase 44 304 - -
Vium4335g00017 485 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
Vium4335g00017 485 FunFam Carboxypeptidase 333 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4335g00017 Vium-Chr4335 55410 63292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4335g00017 342 480 Calmodulin-binding Proteins AT2G22960 27.857 1.14e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4335g00017 K16297 - gmx:100797264 770.77