Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4334g00002 ATGGGGTGGGGTCACCTCGGAAGGCATGGGTCAGATTCAGGCAACGGAACGGAGGCTGGGCCGAGCAGCACCGCCACCGAGCCACGGCGGTTCCCACTGGCGGCACAGCCAGAAATGATGCGTGCCGCCGAGAAGGACGATCAATACGCATCTTTCGTCTACGAAGCCTGTCGTGATGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGACGAAACTCTTAGGGCAGATGCTTTACTACGTTCTCACAACTGGCTCCGGACAACAAACCCTTGGAGAGGAATACTGCGACATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACTGCTATTCCATATATGGCAGAACGGATTAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAATCTGCCGAGGGTTTTGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGGCACTGGTCCTTTATCCTCGTCGGGACAATCTGTGACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTCTTGCAGTTGGCTCTTCGTGCTAACCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCTGGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCTAGATACCAAATACTGGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTAATCTGGCAACTCCAGATATTGACAAAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGTTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACTCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1185 0.4785 MGWGHLGRHGSDSGNGTEAGPSSTATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQTAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISGTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVREFLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAGSVHQASFASHDRSAGHGLPVLNEEGNLATPDIDKGSWVSDSSSSEHHAVSGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4334g00002 394 Pfam Pex2 / Pex12 amino terminal region 46 277 IPR006845 -
Vium4334g00002 394 SMART ring_2 340 377 IPR001841 -
Vium4334g00002 394 MobiDBLite consensus disorder prediction 163 178 - -
Vium4334g00002 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Vium4334g00002 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Vium4334g00002 394 FunFam Peroxisome biogenesis factor 10 315 391 - -
Vium4334g00002 394 SUPERFAMILY RING/U-box 339 383 - -
Vium4334g00002 394 MobiDBLite consensus disorder prediction 158 178 - -
Vium4334g00002 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 391 IPR013083 -
Vium4334g00002 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 392 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vium4334g00002 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Vium4334g00002 394 CDD RING-HC_PEX10 338 389 - -
Vium4334g00002 394 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4334g00002 Vium-Chr4334 6820 10631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4334g00002 336 390 C3H Transcription Factor Family AT4G28270 32.394 2.27e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4334g00002 K13346 - gmx:100783914 744.577