Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4334g00001 ATGGGGTGGGGTCACCTCGGAAGGCATGGGTCAGATTCAGGCAACGGAACGGAGGCTGGGCCGAGCAGCACCGCCACCGAGCCACGGCGGTTCCCACTGGCGGCACAGCCAGAAATGATGCGTGCCGCCGAGAAGGACGATCAATACGCATCTTTCGTCTACGAAGCCTGTCGTGATGCCTTTCGCCACCTCTTTGGTACCAGAGTTGCAGTGGCTTACCAAAACGAGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCTCTTTTCATTGTATATCAGACTGCTATTCCATATATGGCAGAACGGATTAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTCAGAATCTGCCGAGGGTTTTGGAGAAAATGCCCACAGGAGCCCTGGTTCTCAGATTTCTGGCACTGGTCCTTTATCCTCGTCGGGACAATCTGTGACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTCTTGCAGTTGGCTCTTCGTGCTAACCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCTGGCATTCGTTATGTATTTATTGGAAAAGCATCAAATCAAAGACCTAGATACCAAATACTGGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTAATCTGGCAACTCCAGATATTGACAAAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGTTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACTCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1095 0.4776 MGWGHLGRHGSDSGNGTEAGPSSTATEPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNEVAGTYGLPPTPARRALFIVYQTAIPYMAERISSRIASRGIVLADSESAEGFGENAHRSPGSQISGTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVREFLQLALRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAAEGLRRRNFTSIAGSVHQASFASHDRSAGHGLPVLNEEGNLATPDIDKGSWVSDSSSSEHHAVSGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4334g00001 364 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 77 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vium4334g00001 364 MobiDBLite consensus disorder prediction 128 148 - -
Vium4334g00001 364 CDD RING-HC_PEX10 308 359 - -
Vium4334g00001 364 FunFam Peroxisome biogenesis factor 10 285 361 - -
Vium4334g00001 364 Pfam Zinc finger, C3HC4 type (RING finger) 309 353 - -
Vium4334g00001 364 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Vium4334g00001 364 SUPERFAMILY RING/U-box 309 353 - -
Vium4334g00001 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 361 IPR013083 -
Vium4334g00001 364 Pfam Pex2 / Pex12 amino terminal region 80 247 IPR006845 -
Vium4334g00001 364 SMART ring_2 310 347 IPR001841 -
Vium4334g00001 364 MobiDBLite consensus disorder prediction 133 148 - -
Vium4334g00001 364 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
Vium4334g00001 364 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4334g00001 Vium-Chr4334 6817 10631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4334g00001 277 360 C3H Transcription Factor Family AT3G58030 31.395 1.77e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4334g00001 K13346 - gmx:100783914 668.307