Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium432g00021 ATGAGTGCTCAACAAAAAGAAACGGAAAATCATGACACGCTTTCGTCCAATCCAACGGTGGGTGATACAATGGGGGTAACCGGTGAAACCTCGCATGGAAACAATCACTGGAAGCCAGAGAAAATTCAGTTGGAAATTCCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTGGATGCTCCCAGACCTTCTTCTTCTTCTTCTTCGGCTTCGAGAGGCAAATCATCCATGAGAAACATCTTGCCGAGGTTTGGCTTCAAGAATCGTCAATCGCTTGATGTCGAAAAGGTTGTTACCGCAGCTTCGGAAGCTTCTTTTTCTGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGATAGAAGAAATTGGACGTGCAGACGTAGAATCTGCTCTGGCTGGAACTCTTGCTGCTTCTCCATACGGAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATGGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACATGAAGTCAATCAATCAACAAAGGATTCTGACAATGGTGGTGGTGAAGATATCGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGTAAGGTCCGAGCAGGGAGATGATTACAGGGTTTGGCAGGAACTCCCAGTGCTCGTTATTGTCAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAGGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCCGTCCAATTTCTTTCGGTTGTCCTATTCGCTCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTAGTAGATGGAGAAGAAGATGGCAAACTTTATCACAGCAGCAGCGTGGTTCTTCAGGATGA 1380 0.4565 MSAQQKETENHDTLSSNPTVGDTMGVTGETSHGNNHWKPEKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSSSASRGKSSMRNILPRFGFKNRQSLDVEKVVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPIEEIGRADVESALAGTLAASPYGRETQGMIARSRSVPVNGKEKGIRRMDSVFRIIPSTPRVHEVNQSTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGVRSEQGDDYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWQTLSQQQRGSSG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium432g00021 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 304 IPR013083 -
Vium432g00021 459 CDD RING_CH-C4HC3_MARCH 249 297 - -
Vium432g00021 459 SMART ringv_2 248 297 IPR011016 GO:0008270
Vium432g00021 459 MobiDBLite consensus disorder prediction 1 33 - -
Vium432g00021 459 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Vium432g00021 459 SUPERFAMILY RING/U-box 245 300 - -
Vium432g00021 459 MobiDBLite consensus disorder prediction 1 45 - -
Vium432g00021 459 PANTHER OS02G0165000 PROTEIN 10 457 - -
Vium432g00021 459 MobiDBLite consensus disorder prediction 81 103 - -
Vium432g00021 459 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium432g00021 Vium-Chr432 210954 214538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium432g00021 246 303 C3H Transcription Factor Family AT2G37950 47.458 4.76e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium432g00021 - - gmx:100782610 664.07