Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium432g00020 ATGAGTGCTCAACAAAAAGAAACGGAAAATCATGACACGCTTTCGTCCAATCCAACGGTGGGTGATACAATGGGGGTAACCGGTGAAACCTCGCATGGAAACAATCACTGGAAGCCAGAGAAAATTCAGTTGGAAATTCCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTGGATGCTCCCAGACCTTCTTCTTCTTCTTCTTCGGCTTCGAGAGGCAAATCATCCATGAGAAACATCTTGCCGAGGTTTGGCTTCAAGAATCGTCAATCGCTTGATGTCGAAAAGGTTGTTACCGCAGCTTCGGAAGCTTCTTTTTCTGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGATAGAAGAAATTGGACGTGCAGACGTAGAATCTGCTCTGGCTGGAACTCTTGCTGCTTCTCCATACCAGGGAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATGGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACATGAAGTCAATCAATCAACAAAGGATTCTGACAATGGTGGTGGTGAAGATATCGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGTAAGGTCCGAGCAGGGAGATGATTACAGGGTTTGGCAGGAACTCCCAGTGCTCGTTATTGTCAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAGGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCCGTCCAATTTCTTTCGGTTGTCCTATTCGCTCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTAGTAGATGGAGAAGAAGATGGCAAACTTTATCACAGCAGCAGCGTGGTTCTTCAGGATGA 1383 0.457 MSAQQKETENHDTLSSNPTVGDTMGVTGETSHGNNHWKPEKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSSSASRGKSSMRNILPRFGFKNRQSLDVEKVVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPIEEIGRADVESALAGTLAASPYQGRETQGMIARSRSVPVNGKEKGIRRMDSVFRIIPSTPRVHEVNQSTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGVRSEQGDDYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWQTLSQQQRGSSG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium432g00020 460 ProSiteProfiles Zinc finger RING-CH-type profile. 242 304 IPR011016 GO:0008270
Vium432g00020 460 SMART ringv_2 249 298 IPR011016 GO:0008270
Vium432g00020 460 Pfam RING-variant domain 250 297 IPR011016 GO:0008270
Vium432g00020 460 MobiDBLite consensus disorder prediction 1 33 - -
Vium432g00020 460 SUPERFAMILY RING/U-box 246 301 - -
Vium432g00020 460 MobiDBLite consensus disorder prediction 1 45 - -
Vium432g00020 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 305 IPR013083 -
Vium432g00020 460 CDD RING_CH-C4HC3_MARCH 250 298 - -
Vium432g00020 460 PANTHER OS02G0165000 PROTEIN 10 458 - -
Vium432g00020 460 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium432g00020 Vium-Chr432 210953 214538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium432g00020 247 304 C3H Transcription Factor Family AT2G37950 47.458 4.64e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium432g00020 - - gmx:100782610 659.448