LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium432g00005	ATGAAGGAAACCGAGAAGAGCTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTATTCTACTTTCCTCAGGGGCATGCGGAACACGCGCAGTCCAACCTTGATTTTGGAGCCTCCAGGATTCCGATCCCGCCGCTTGTTCTCTGCCGCGTGGCGGCTGTTAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTAAGGTTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAGGACAGCGATAAGGTTGACGGTAACGGCCCGGAGGGTTCTGAAAAGCCAGCGTCGTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACCATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGCTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCTATAGTGTTTCTGCGGGCAGAGAATGGGGATCTCTGCGTTGGGATTCGTAGGGCGAAGAGAGGGGGTGTTGGTGGTCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGGATTGGCCCTTACGGGGCCTTTTCAGCTTTTTTGAGGGAGGAGACCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTTTGGCGGCTAACAACCAAACCTTTGAGGTTGTTTATTATCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTGAGGGGTGCTATGAGGATTCAGTGGTGCTCTGGGTTGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAACCAGATTTGCTCCATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATACCAGTGATCCATCTGGCACCGTTCTCTCCACCAAGGAAGAAGCTGAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGCCTAGCACTAGCAGCCCCATGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTGATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCGTGCTTGCTGACCATGGGAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAGAATGGCACCGCAACAGATGATGAGAACAAGGAGAAGAAGGAGACGGGATTCCTCAGTGACTCCCAGTCTTCAGTTTCCCCAGGAAAATCATCTTCCACCGCCGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAAACAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTCGGTTCTTACGAGGAACTTTACATGAGACTGGCCACCATGTTTGGAATAGAACGCTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTGAAACAAACTGGAGAAGAACCATTCAGTGAGTTCACGAAGACCGCTAAAAGATTGACAATTCTAAGCGATTCAAGCAGCAAAGATAGTAGAAGGGTTTGGATCACAGGAATTCGGAATGCTGAACATGGATTGGATGCTACTTCGAATAAGACAGGTCCTATGAGCATATTTGCTTAA	2085	0.5113	MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEDSDKVDGNGPEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGIGPYGAFSAFLREETKVVRNGCGRPKVSGESVREAITLAANNQTFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGLRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNIPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGPSTSSPMCCLSDNAPAGIQGARHAQIGISLSDLHLNHNKLQLGLLPTNVRQLDLQNGISNVNITNHGKSKESLSCLLTMGSPRKSLEKSDQVKRHQFLLFGQPILTEQQISRSSSDVLSQNGTATDDENKEKKETGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMETEDVGRTLDLSCLGSYEELYMRLATMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFTKTAKRLTILSDSSSKDSRRVWITGIRNAEHGLDATSNKTGPMSIFA	694

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium432g00005	694	Gene3D	-	578	665	-	-
Vium432g00005	694	FunFam	Auxin response factor	110	214	-	-
Vium432g00005	694	Gene3D	-	306	378	-	-
Vium432g00005	694	FunFam	Auxin response factor	306	379	-	-
Vium432g00005	694	ProSiteProfiles	PB1 domain profile.	581	661	IPR000270	GO:0005515
Vium432g00005	694	Gene3D	-	110	214	IPR015300	-
Vium432g00005	694	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	6	661	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Vium432g00005	694	Pfam	B3 DNA binding domain	112	213	IPR003340	GO:0003677
Vium432g00005	694	ProSiteProfiles	B3 DNA-binding domain profile.	112	214	IPR003340	GO:0003677
Vium432g00005	694	CDD	B3_DNA	111	212	IPR003340	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium432g00005	Vium-Chr432	46703	50040	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium432g00005	4	663	B3 DNA Binding Superfamily	AT4G30080	60.441	0.0	772

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Vium432g00005		B3	4.4e-22	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium432g00005	-		-	gmx:100778135	1258.82

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