Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium432g00005 ATGAAGGAAACCGAGAAGAGCTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTATTCTACTTTCCTCAGGGGCATGCGGAACACGCGCAGTCCAACCTTGATTTTGGAGCCTCCAGGATTCCGATCCCGCCGCTTGTTCTCTGCCGCGTGGCGGCTGTTAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTAAGGTTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAGGACAGCGATAAGGTTGACGGTAACGGCCCGGAGGGTTCTGAAAAGCCAGCGTCGTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACCATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGCTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCTATAGTGTTTCTGCGGGCAGAGAATGGGGATCTCTGCGTTGGGATTCGTAGGGCGAAGAGAGGGGGTGTTGGTGGTCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGGATTGGCCCTTACGGGGCCTTTTCAGCTTTTTTGAGGGAGGAGACCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTACTTTGGCGGCTAACAACCAAACCTTTGAGGTTGTTTATTATCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTGAGGGGTGCTATGAGGATTCAGTGGTGCTCTGGGTTGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCCAATTCGCCTTGGAGGCTTCTTCAGGTTACGTGGGATGAACCAGATTTGCTCCATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACATACCAGTGATCCATCTGGCACCGTTCTCTCCACCAAGGAAGAAGCTGAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGCCTAGCACTAGCAGCCCCATGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACCATAATAAGCTGCAGTTGGGGTTGCTTCCAACCAACGTTCGCCAGCTTGATTTGCAAAATGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCGTGCTTGCTGACCATGGGAAGTCCACGCAAGAGTTTGGAGAAATCTGATCAAGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAGAATGGCACCGCAACAGATGATGAGAACAAGGAGAAGAAGGAGACGGGATTCCTCAGTGACTCCCAGTCTTCAGTTTCCCCAGGAAAATCATCTTCCACCGCCGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAAACAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTCGGTTCTTACGAGGAACTTTACATGAGACTGGCCACCATGTTTGGAATAGAACGCTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAACCGGTGCTCTGAAACAAACTGGAGAAGAACCATTCAGTGAGTTCACGAAGACCGCTAAAAGATTGACAATTCTAAGCGATTCAAGCAGCAAAGATAGTAGAAGGGTTTGGATCACAGGAATTCGGAATGCTGAACATGGATTGGATGCTACTTCGAATAAGACAGGTCCTATGAGCATATTTGCTTAA 2085 0.5113 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEDSDKVDGNGPEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGIGPYGAFSAFLREETKVVRNGCGRPKVSGESVREAITLAANNQTFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGLRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNIPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGPSTSSPMCCLSDNAPAGIQGARHAQIGISLSDLHLNHNKLQLGLLPTNVRQLDLQNGISNVNITNHGKSKESLSCLLTMGSPRKSLEKSDQVKRHQFLLFGQPILTEQQISRSSSDVLSQNGTATDDENKEKKETGFLSDSQSSVSPGKSSSTAEFSWQLGSDTSHCKVFMETEDVGRTLDLSCLGSYEELYMRLATMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFTKTAKRLTILSDSSSKDSRRVWITGIRNAEHGLDATSNKTGPMSIFA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium432g00005 694 Gene3D - 578 665 - -
Vium432g00005 694 FunFam Auxin response factor 110 214 - -
Vium432g00005 694 Gene3D - 306 378 - -
Vium432g00005 694 FunFam Auxin response factor 306 379 - -
Vium432g00005 694 ProSiteProfiles PB1 domain profile. 581 661 IPR000270 GO:0005515
Vium432g00005 694 Gene3D - 110 214 IPR015300 -
Vium432g00005 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium432g00005 694 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Vium432g00005 694 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Vium432g00005 694 CDD B3_DNA 111 212 IPR003340 GO:0003677
Vium432g00005 694 SMART B3_2 112 214 IPR003340 GO:0003677
Vium432g00005 694 MobiDBLite consensus disorder prediction 91 110 - -
Vium432g00005 694 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Vium432g00005 694 MobiDBLite consensus disorder prediction 528 568 - -
Vium432g00005 694 Pfam Auxin response factor 268 351 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium432g00005 Vium-Chr432 46703 50040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium432g00005 4 663 B3 DNA Binding Superfamily AT4G30080 60.441 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium432g00005 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium432g00005 - - gmx:100778135 1258.82