Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium432g00004 ATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGATGTAGAAGATGACTGGGATTCTCAATTTAAATGCCTTGAACACCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTGTGTGCCAAAACACAAACTGAAAATCCTCAATTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATCAAACAGCTGGAAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCACCGATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAGCTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCATCGTCGATTAAGTTTCAGTCCTCTATTTTCCATTCCTGTCGTCCAGGCTTTGCAAAAACAGCAAAGGACATCTGCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCCATCAGAAGATGTTGAGTTAATGAGATCCTCACATCTGGTGTCAGATCCACCAAGGAAATGCACGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCTAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCTTAGTCCAGGAGGATGTTAGGGGTTCTGTGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 930 0.4398 MKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEDDWDSQFKCLEHQHSEVFSASSNGLCAKTQTENPQFGTEFSVSCNGISPIKQLEKAPGPTYGKTIPLKNVTFNGKDLHRFRTYSPVSVFESSSSSSVENSSFDRPVIPVKRARSKRHRRLSFSPLFSIPVVQALQKQQRTSASESDFGTNVAGNMSNKVKSHKKKDLSLPSEDVELMRSSHLVSDPPRKCTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSLVQEDVRGSVFASSNLHGNSVG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium432g00004 309 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Vium432g00004 309 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Vium432g00004 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 280 - -
Vium432g00004 309 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Vium432g00004 309 Gene3D - 217 286 IPR013088 GO:0006355|GO:0008270
Vium432g00004 309 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Vium432g00004 309 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Vium432g00004 309 FunFam GATA transcription factor 214 299 - -
Vium432g00004 309 MobiDBLite consensus disorder prediction 175 191 - -
Vium432g00004 309 PANTHER GATA TRANSCRIPTION FACTOR 34 288 - -
Vium432g00004 309 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium432g00004 Vium-Chr432 35803 40113 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium432g00004 8 286 C2C2-Gata Transcription Factor Family AT1G08010 37.671 3.19e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium432g00004 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium432g00004 - - gmx:100778675 465.307