Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium432g00003 ATGTCTGAGTGTTTCGGAACAGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGATGTAGAAGATGACTGGGATTCTCAATTTAAATGCCTTGAACACCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTGTGTGCCAAAACACAAACTGAAAATCCTCAATTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATCAAACAGCTGGAAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCACCGATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAGCTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCATCGTCGATTAAGTTTCAGTCCTCTATTTTCCATTCCTGTCGTCCAGGCTTTGCAAAAACAGCAAAGGACATCTGCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCCATCAGAAGATGTTGAGTTAATGAGATCCTCACATCTGGTGTCAGATCCACCAAGGAAATGCACGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCTAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCTTAGTCCAGGAGGATGTTAGGGGTTCTGTGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 963 0.4382 MSECFGTDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEDDWDSQFKCLEHQHSEVFSASSNGLCAKTQTENPQFGTEFSVSCNGISPIKQLEKAPGPTYGKTIPLKNVTFNGKDLHRFRTYSPVSVFESSSSSSVENSSFDRPVIPVKRARSKRHRRLSFSPLFSIPVVQALQKQQRTSASESDFGTNVAGNMSNKVKSHKKKDLSLPSEDVELMRSSHLVSDPPRKCTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSLVQEDVRGSVFASSNLHGNSVG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium432g00003 320 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Vium432g00003 320 FunFam GATA transcription factor 225 310 - -
Vium432g00003 320 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 291 - -
Vium432g00003 320 MobiDBLite consensus disorder prediction 186 202 - -
Vium432g00003 320 SMART GATA_3 229 279 IPR000679 GO:0006355|GO:0043565
Vium432g00003 320 MobiDBLite consensus disorder prediction 186 212 - -
Vium432g00003 320 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Vium432g00003 320 Gene3D - 228 297 IPR013088 GO:0006355|GO:0008270
Vium432g00003 320 CDD ZnF_GATA 234 281 IPR000679 GO:0006355|GO:0043565
Vium432g00003 320 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Vium432g00003 320 PANTHER GATA TRANSCRIPTION FACTOR 45 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium432g00003 Vium-Chr432 35802 40113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium432g00003 19 297 C2C2-Gata Transcription Factor Family AT1G08010 37.671 3.57e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium432g00003 GATA 9.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium432g00003 - - gmx:100778675 473.011