Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00040 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATAGGAACGAACTCGTTGTAATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGTGAGATATGCGGCGATGATGTGGGAGTGACGGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCGTGCTATGAGTATGAAAGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTTAAAGGGAGCCCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAGCACGAATTCAACATCGATGACCAAATGAACAAGCATAATCACTCTGCCGAGGCCATGCTGCATGGCAAGATGAGCTACGGAAGAGGTCCAGAAGATGAGGAGAATTCTCAATTCCCAGCTGTTATTGCCGGTGGTCGTTCTCGCCCTGTTAGTGGAGAGTTGCCACTATCATCTCATTATGGGGAGCACCCTTCACTGCATAATCGTGTGCACCCTTATCCGGCATCTGATCCTACAGGAAATGGAAGATGGGATGAAACCAAAGATGATAGAACGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATACAGAATGGTGATTGTTGCACGGCTTGTTATCCTTGCCTTCTTCCTCCGATATAGACTGATGAATCCTGTACATGATGCATTGGGGCTGTGGTTAACATCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCAGTAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTCAGTACTGTGGATCCCATGAAGGAACCTCCACTGGTTACGGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGATGGAGCTTCAATGTGTACTTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGAGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCACAGGGAGGATGGATCATGCAGGATGGAACACCATGGCCAGGAAACAATACCAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGACACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCTGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACGAATGCTCCTTTCATGCTGAATTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTAGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCACAAAGATTTGATGGCATTGATAGGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACTGGGTGTGTATTTAGGAGACAAGCTTTATACGGTTATAATCCTCCCAAGGGTGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGGTGTAGATGGAGAGGCTGCAACCCTAAGAGGACCAGATGATGATAAAGAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAAGCCAGCTTAAAGAAGCCATTCACGTGATCAGCTGCGGATACGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCTAAGCGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGCTATAAGGAAGGGAAGTTGAAGTGGCTTGAGCGATTTGCATATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTCGCCTACTGTGTCCTTCCTGCTGTCTGTTTGCTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGTGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGATACCAACTTCACTGTTACATCAAAGGCAGCGGATGATGAAGAATTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGCGTTGTTGCTGGCATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGACCTCTATTTGGAAAACTGTTCTTCTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCGATACTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGATCCATTCGTATTAAAAACCAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTAA 3099 0.4514 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGPEDEENSQFPAVIAGGRSRPVSGELPLSSHYGEHPSLHNRVHPYPASDPTGNGRWDETKDDRTDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSVRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGAKRPKMISCDCCPCFGKRKKVKYEGNGVDGEAATLRGPDDDKEMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00040 1032 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vium4328g00040 1032 MobiDBLite consensus disorder prediction 190 204 - -
Vium4328g00040 1032 SUPERFAMILY RING/U-box 21 109 - -
Vium4328g00040 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 469 615 IPR029044 -
Vium4328g00040 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Vium4328g00040 1032 FunFam Cellulose synthase 441 615 - -
Vium4328g00040 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Vium4328g00040 1032 Pfam Cellulose synthase 324 1026 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vium4328g00040 1032 Coils Coil 422 442 - -
Vium4328g00040 1032 MobiDBLite consensus disorder prediction 151 220 - -
Vium4328g00040 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 337 793 IPR029044 -
Vium4328g00040 1032 FunFam Cellulose synthase 19 110 - -
Vium4328g00040 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vium4328g00040 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 227 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00040 Vium-Chr4328 295998 301406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00040 1 1032 Cell Wall Biosynthesis AT5G17420 85.783 0.0 1834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00040 K10999 - gmx:100779834 2057.34