Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00038 ATGGCAGCAAAGGAAGGCAAAGCAATAGGCATAGACCTCGGCACGACCTACAGCTGCGTAGGCGTGTGGCAAAACGACCGCGTTGAGATCATCCCCAACGACCAAGGCAACCGAACCACACCCTCTTACGTGGCTTTCACCGACACCGAGAGGCTGATCGGAGACGCTGCCAAGAACCAGGTTGCTATGAATCCGCAGAACACCGTCTTCGATGCTAAGCGTCTAATCGGGCGCAGATTCTCCGACTCGTCGGTTCAGAACGACATGAAGCTATGGCCGTTTAAGGTGGTGGCAGGCCCGGGTGACAAGCCCATGATCGTGGTCTCGTACAAGGGTGAGGAGAAGAAGTTTTCTGCTGAAGAGATATCTTCCATGGTGTTGATCAAGATGAGGGAAGTGGCAGAGGCGTTTCTTGGTCATTCCGTGAAGAACGCTGTTATTACTGTCCCTGCTTATTTCAACGACTCGCAAAGGCAAGCCACGAAGGACGCAGGGGCCATTTCGGGGTTGAATGTGTTGAGAATCATCAACGAACCCACTGCCGCTGCTATTGCCTACGGCTTGGACAAGAAGGCTTCAAGAAAAGGTGAACAGAACGTGCTTATTTTCGACTTGGGTGGTGGAACCTTTGATGTTTCCATATTGACCATCGAGGAGGGGATTTTCGAAGTGAAGGCCACTGCTGGTGATACTCATCTTGGGGGTGAAGATTTTGATAACAGGTTGGTGAATCACTTTGTTACAGAGTTCAAAAGGAAGCACAAAAAGGATATTAGCGGGAATGCTAGAGCGTTGAGGAGGTTGAGGACAGCGTGTGAGAGAGCCAAGAGGACGTTGTCTTCCACCGCGCAGACAACCATTGAAATCGATTCTTTATACGAAGGGATTGATTTCTATGCAACGATTACCAGAGCCAGGTTTGAGGAGATGAACATGGACTTGTTCAGGAAGTGCATGGAGCCTGTGGAGAAGTGTCTGCGTGATGCCAAGATTGACAAGAGTCACGTTCATGAAGTTGTTCTTGTTGGAGGGTCCACCAGGATCCCGAAGGTTCAGCAACTGTTGCAGGATTTCTTCAACGGGAAAGAGCTTTGCAAGAGCATTAACCCCGATGAAGCTGTTGCTTATGGTGCAGCTGTTCAGGCTGCGATTTTGAGCGGTGAAGGGGACGAGAAGGTTCAAGATTTGTTGCTGTTGGATGTGACTCCACTCAGTCTTGGGCTTGAAACTGCTGGTGGTGTTATGACAGTGTTGATTCCGAGGAACACAACGATTCCCACCAAGAAGGAGCAGATTTTCTCGACTTATTCCGATAACCAACCCGGGGTTTTGATCCAAGTGTTTGAAGGAGAGCGTGCTCGAACAAAGGACAACAATCTTCTCGGGAAGTTTGAGCTCACTGGGATCCCTCCTGCACCAAGAGGCGTTCCTCAAATTAATGTCTGCTTTGACATTGACGCTAATGGGATTTTGAATGTCTCTGCGGAGGATAAAACCGCGGGTGTGAAGAACAAGATTACTATAACCAACGACAAAGGTAGGTTGAGCAAGGAGGAGATAGAGAAGATGGTGAAGGATGCAGAGAGGTACAAGGCAGAGGATGAGGAGGTAAAGAAGAAGGTGGATGCGAAAAACTCGCTTGAGAATTATGCTTACAACATGAGGAACACGATAAAGGATGAGAAGATTGGGGGGAAGTTGGCAGCGGATGATAAGCAGAAGATTGAGAAGGCTGTGGAGGATGCGATTCAGTGGCTGGAGGGGAACCAGTTGGCGGAAGTGGATGAGCTTGAAGACAAGCAGAAGGAGTTGGAAGGAATCTGCAACCCCATCATTGCCAAGATGTATCAGGGTGGTGCTGGTGGAGATGTTCCTATGGCTGATGACATGCCTGGTGGTGGGTCTGGTTCTGGTTCTGGTGCTGGACCTAAGATTGAAGAAGTTGACTGA 1950 0.4933 MAAKEGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDSSVQNDMKLWPFKVVAGPGDKPMIVVSYKGEEKKFSAEEISSMVLIKMREVAEAFLGHSVKNAVITVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKASRKGEQNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKHKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEEMNMDLFRKCMEPVEKCLRDAKIDKSHVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVDAKNSLENYAYNMRNTIKDEKIGGKLAADDKQKIEKAVEDAIQWLEGNQLAEVDELEDKQKELEGICNPIIAKMYQGGAGGDVPMADDMPGGGSGSGSGAGPKIEEVD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 368 388 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 145 165 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 7 20 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 336 352 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 208 218 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 57 65 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 395 414 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 35 47 - -
Vium4328g00038 649 PRINTS 70kDa heat shock protein signature 476 492 - -
Vium4328g00038 649 Gene3D - 70 125 - -
Vium4328g00038 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vium4328g00038 649 FunFam Heat shock 70 kDa 234 317 - -
Vium4328g00038 649 MobiDBLite consensus disorder prediction 618 649 - -
Vium4328g00038 649 Pfam Hsp70 protein 8 617 IPR013126 GO:0005524|GO:0140662
Vium4328g00038 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 542 623 IPR029048 -
Vium4328g00038 649 Coils Coil 520 540 - -
Vium4328g00038 649 CDD HSPA1-2_6-8-like_NBD 8 386 - -
Vium4328g00038 649 Gene3D - 9 383 - -
Vium4328g00038 649 FunFam Heat shock cognate 70 kDa protein 2 318 365 - -
Vium4328g00038 649 Gene3D - 545 618 IPR029048 -
Vium4328g00038 649 PANTHER HEAT SHOCK PROTEIN 70KDA 8 582 IPR013126 GO:0005524|GO:0140662
Vium4328g00038 649 FunFam Heat shock 70 kDa protein 196 263 - -
Vium4328g00038 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 391 548 IPR029047 -
Vium4328g00038 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 390 544 IPR029047 -
Vium4328g00038 649 FunFam Heat shock 70 kDa 390 544 - -
Vium4328g00038 649 FunFam Heat shock protein 70 9 195 - -
Vium4328g00038 649 FunFam heat shock cognate 70 kDa protein-like 544 618 - -
Vium4328g00038 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vium4328g00038 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vium4328g00038 649 Gene3D Actin; Chain A, domain 4 234 317 - -
Vium4328g00038 649 FunFam Heat shock 70 kDa protein 70 125 - -
Vium4328g00038 649 Gene3D - 191 365 - -
Vium4328g00038 649 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Vium4328g00038 649 SUPERFAMILY Actin-like ATPase domain 195 387 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00038 Vium-Chr4328 284557 286771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00038 1 649 Calmodulin-binding Proteins AT1G16030 86.482 0.0 1167