Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00037 ATGCAGCAGAGTGATCAGACGGTGTTGAGCTTGAGGCCCGGCGGTGGAAAAGGCAGCAGGCTCCTCGGCCCTCGATTCGACTCCTCATCCTCGTCTTCTGCTTCCCCTGCTTTTGGCTCCTTTTCTGCTGATCTTCCTCTCCTGCGTCCTCATGGCGGCTCTCCCTCTCCCTTCTCTATCAAGGCTGGAGATTCCCGGTTTGAAGGTCGTGAGCGTGTGCGATATACCAGGGAGCAGCTCTTACAACTCAGAGAGGGTGTTGAGATCCTTGATGATGTTTTGAAGATCAGACAAGAAATTGTAGCTGTACTTTTTGGTGAAGATCAAAGTTGGGCCCGCCCAGAAAGTAACCCCTCAAATCAATTTCAAAATCGATATTCTGAGCCAGATAATCGTGATTGGCGTGGACGATCTGGCCAACCTTTTGGTAATGCAGATGAGAGGTCTTGGGATAATCTCAAGGAGAATAGGGAGTTTGGAAATAATCGTCAAGAGCAACTGAATTCTCAGTTTTCAAGGGCACAAATATCTTCTAACCAAGGGGGGGGACCTACTCCAACACTAGTCAAGGCTGAGGTGCCATGGTCAGCTAGAAGGGGAACTCTCTCTGATAAAGATCGTGTCTTAAAGACAGTTAAAGGAATACTAAATAAGTTGACTCCTGAAAAATTTGATCTCTTGAAGGGGCAGTTGATTGATTCTGGCATTACATCTGCCGACATATTGAAGGGAGTTATTTCACTAATATTTGATAAGGCAGTGCTAGAACCAACATTTTGCCCAATGTATGCCCAGCTATGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGAAATCACTTTTAAGAGAGTGCTCTTGAATATCTGCCAGGAGGCTTTTGAAGGTGCAGATAACCTGAGGGAAGAAGTGAGACAGATGACTGCTCCTGAGCAGGAGATGGAGCGAAGGGATAAGGACAGACTTGTCAAGATTCGAACCCTTGGAAACATTCGTTTAATTGGTGAGCTATTGAAGCAAAAAATGGTTCCCGAAAAGATTGTTCATCACATTGTTCAGGAGCTTTTAGGTCCGCCTGACAGCAAGGTATGTCCAGCTGAGGAAAATGTTGAAGCTATATGTCAATTTTTCAACACTATTGGTAAGCAGCTTGATGAAAGCCAAAAATCGAGGCGTATTAATGATATGTACTTCAGTCGTTTGAAAGAATTGAGCACCAATCCCCAACTTGTTCCACGGCTGCGGTTTATGGTTCGTGATGTTCTAGATTTGCGTTCTAATAACTGGATTCCTAGACGTGAAGAGGTGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAGAAAAATCTTGGATTGCGTCCAGGTGCCACTGCAAGTATGAGAAATAGCCGTGTAACTTCTGGTGTTCAAGGAAATGTCAGTCAGGGAGGATTTCCAATTGCCCGACCTGGTACTGGTGGTATGATGCCTGGGATGCCGGGGACAAGGAGGATTTCTGGAATTGATAATGACAACTGGGAGGTTCCCAGGACAAGATCAATGCCGAGAGGAGACATGTCAGGCATGCAAGCTGGAGGGCGTGGTCAGTCTCCTTTCATATCTAAGACACCAACTGTTAGCTCAAAGTTACTACCTCAAGGTAGTGGTGGTACTATAAGTGGGAGAAGCAGTGCCCTGGTGCATGGAGGTGGTGGTGCTCCTTCTGCTCGTCCATCAAATGTTGGTTTGAGTACCGAGTCCACACCTCAAATGCCTTCACCTGTTAAAGCTGTTTCTGCCATACCCTCTGAGAAGCCACAAGCTTCAGCTCCAAAATTGAATGTTGACGAACTTCAGCGTAAAACTAGTTCTCTTCTGGAGGAATATTTCAGTGTCCGGCTTTTGGACGAGGCATTGCAGTGTGTGGAGGAACTAAAAGCTCCGGCTTATCATCCCGAAGTTGTGAAGGAAGCCATTTCCATTGGACTAGATAAAAGTCCGCCATGTGTTGAACCTGTTGGCAAACTTCTTGAGTATCTGTTCGTGAAGAAGATTCTTTCAGCCAGAGACATAGGAACTGGGTGCATGTTATTTGCTTCTCTGCTGGATGATATCGGCATAGACTTACCTAAAGCACCAAATAATTTTGGTGAGATAGTAGGGAAACTAGTTTTGGCTGGGGCTTTGGATTTTAAGGTGGTGAGAGACGTCCTGAAGAAGGTGGAGGATGACCGGTTCCAGAAAGCAATATTTTCTGCTGCATTGCAGGTAATTAGCTCTGCATCTGGGCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCCTGTCAGAGTCTGTTCAACTGA 2355 0.4582 MQQSDQTVLSLRPGGGKGSRLLGPRFDSSSSSSASPAFGSFSADLPLLRPHGGSPSPFSIKAGDSRFEGRERVRYTREQLLQLREGVEILDDVLKIRQEIVAVLFGEDQSWARPESNPSNQFQNRYSEPDNRDWRGRSGQPFGNADERSWDNLKENREFGNNRQEQLNSQFSRAQISSNQGGGPTPTLVKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNICQEAFEGADNLREEVRQMTAPEQEMERRDKDRLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKVCPAEENVEAICQFFNTIGKQLDESQKSRRINDMYFSRLKELSTNPQLVPRLRFMVRDVLDLRSNNWIPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNSRVTSGVQGNVSQGGFPIARPGTGGMMPGMPGTRRISGIDNDNWEVPRTRSMPRGDMSGMQAGGRGQSPFISKTPTVSSKLLPQGSGGTISGRSSALVHGGGGAPSARPSNVGLSTESTPQMPSPVKAVSAIPSEKPQASAPKLNVDELQRKTSSLLEEYFSVRLLDEALQCVEELKAPAYHPEVVKEAISIGLDKSPPCVEPVGKLLEYLFVKKILSARDIGTGCMLFASLLDDIGIDLPKAPNNFGEIVGKLVLAGALDFKVVRDVLKKVEDDRFQKAIFSAALQVISSASGQAVLDSQASDIEACQSLFN 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00037 784 MobiDBLite consensus disorder prediction 1 37 - -
Vium4328g00037 784 FunFam Eukaryotic translation initiation factor isoform 4G-2 613 774 - -
Vium4328g00037 784 MobiDBLite consensus disorder prediction 580 596 - -
Vium4328g00037 784 Gene3D - 201 436 - -
Vium4328g00037 784 Pfam MIF4G domain 209 435 IPR003890 GO:0003723|GO:0005515
Vium4328g00037 784 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 59 768 IPR045208 GO:0003743
Vium4328g00037 784 SUPERFAMILY ARM repeat 613 771 IPR016024 -
Vium4328g00037 784 MobiDBLite consensus disorder prediction 476 598 - -
Vium4328g00037 784 MobiDBLite consensus disorder prediction 112 127 - -
Vium4328g00037 784 SUPERFAMILY ARM repeat 203 437 IPR016024 -
Vium4328g00037 784 FunFam Eukaryotic translation initiation factor isoform 4G-2 200 436 - -
Vium4328g00037 784 SMART ma3_7 620 732 IPR003891 -
Vium4328g00037 784 Pfam MA3 domain 620 732 IPR003891 -
Vium4328g00037 784 SMART if4_15 209 435 IPR003890 GO:0003723|GO:0005515
Vium4328g00037 784 ProSiteProfiles MI domain profile. 619 741 IPR003891 -
Vium4328g00037 784 MobiDBLite consensus disorder prediction 536 564 - -
Vium4328g00037 784 Gene3D - 612 779 - -
Vium4328g00037 784 MobiDBLite consensus disorder prediction 112 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00037 Vium-Chr4328 266637 272756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00037 1 782 Eukaryotic Initiation Factors Gene Family AT5G57870 66.121 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00037 K03260 - gmx:100781275 1382.85