Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00029 ATGATGGCATTCCAAAGGAAGGTTCATACCTTCTTCCTGTGCTTATTATCAATCTTTGTATTTTCTTCCCTTGTTGCTGCTGCTGCTGTGCCAAAACAGCAAGAACAAGATCGGATCTCAGCACTTCCAGGGCAGCCACGTGTGGCATTCTCTCAGTTCTCAGGTTATGTCACTGTGAACGAGCAACATGGTCGAGCACTCTTCTACTGGCTCACTGAATCTCCCTCTTCTCCTCAGAATAAGCCTCTTGTTCTGTGGCTCAATGGAGGGCCTGGATGCTCATCGGTAGCATACGGTGCATCAGAGGAAATTGGGCCATTCCGTGTAAACAAAACTGGATCTTCTCTATATCTCAACCCAGATGCATGGAACAGAGGGCACTACGTCCCCCAGTTGGAAAAAATCCATGACTATAATAAAAAGAATCCCCAAATTATTAATCTCAAAGGGTTCATCGTGGGGAATGCTGATGATAGCTACAATGATGGGATTGGAACTCATCACTATTGGTGGAGCCATTCTATGATATCCGATCAGTCCTACAAATCCATCCTCAAGTACTGCAATTTCACTTCAGAAGAAACATCTAAAAAATGTGATGATGCTTATAGTTATGCAGTTAACTATGAATTTGGAAAAATAGATCAGTACAGCATCTATACCCCAACGTGCCCAACATCACAGAACAATACTGTCAAACACATACGATTCAAGAATCTTCATATGATTTCAGGATATGATCCGTGCACTGAAAATTATGCAGAGAATCTTAACCTTCCCGATTATGAAATAATGGGTAGTCCAGCCGGGGACACAGATTCTGTGGTTCCAGTGACTGCCACGAGGTTTTCTCTGAACCACCTTAACCTAAGCATCAAAACTCGTTGGTATCCATGGTACTCTGGTGGACAGGTTGGTGGATGGACAGAGGTGTATAATGGTCTAACATTTGCAACAGTAAGAGGAGCTGGCCATGAAGTTCCTTTGTTTCAGCCAAAACGAGCTTACACTCTTTTTAAGTCCTTTTTGGCAGGAAAAGAACTACCAAAACATTGA 1056 0.429 MMAFQRKVHTFFLCLLSIFVFSSLVAAAAVPKQQEQDRISALPGQPRVAFSQFSGYVTVNEQHGRALFYWLTESPSSPQNKPLVLWLNGGPGCSSVAYGASEEIGPFRVNKTGSSLYLNPDAWNRGHYVPQLAXKIHDYNKKNPQIINLKGFIVGNADXDSYNDGIGTHHYWWSHSMISDQSYKSILKYCNFTSEETSKKCDDAYSYAVNYEFGKIDQYSIYTPTCPTSQNNTVKHIRFKNLHMISGYDPCTENYAENLNLPDYEIMGSPAGDTDSVVPVTATRFSLNHLNLSIKTRWYPWYSGGQVGGWTEVYNGLTFATVRGAGHEVPLFQPKRAYTLFKSFLAGKELPKH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00029 353 ProSitePatterns Serine carboxypeptidases, histidine active site. 317 334 IPR033124 GO:0004185
Vium4328g00029 353 Pfam Serine carboxypeptidase 271 346 IPR001563 GO:0004185|GO:0006508
Vium4328g00029 353 Pfam Serine carboxypeptidase 44 125 IPR001563 GO:0004185|GO:0006508
Vium4328g00029 353 Pfam Serine carboxypeptidase 126 258 IPR001563 GO:0004185|GO:0006508
Vium4328g00029 353 Gene3D alpha/beta hydrolase 126 238 IPR029058 -
Vium4328g00029 353 Gene3D alpha/beta hydrolase 33 125 IPR029058 -
Vium4328g00029 353 SUPERFAMILY alpha/beta-Hydrolases 34 350 IPR029058 -
Vium4328g00029 353 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 124 IPR001563 GO:0004185|GO:0006508
Vium4328g00029 353 Gene3D - 254 347 - -
Vium4328g00029 353 FunFam Carboxypeptidase 258 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00029 Vium-Chr4328 222778 228571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00029 271 350 Calmodulin-binding Proteins AT2G22960 34.568 1.27e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00029 K16297 - gmx:100783242 558.14