Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00025 ATGATGTTTGACTGTGGTCGCAAGTCAGAATACATGGGTGGCCAGCGGGAAAACTTTTTGAGGTTGGAGGCCCTGGATTCTACACTATCTTCATCTTCTGATACTGGAGTTATAAAATCTGGATTTAGTATTGATAAATTAGGCCATGGTGGTCATGGAAGCAGCACGACTTCAAGGTCTTTTAAAAGGGGTATGAGAAGGGGATCTGAAGGGCTGAAATCAATTGGGCGATCGCTTGGGTTGGGAGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGACCCTCAAGACAAATTCCTGCTTTTATGGAATAAACTCTTTGTTACCTCGTGCATTTTGGCTGTGTCTATAGATCCACTGTTTTTTTATCTCCCAGTCATTAATAATTCGTTTCACTGTCTTGGCATAGACCGAAAGTTGGCAACAATAGTTACAACATTAAGGACAGTGATTGATGCTTTCTATCTTATGCACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCTTCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCTGCACAGATAGCCAAAAGATACTTGCAGCGGTATTTCATCATTGATTTCCTATCAGTGTTGCCTATACCACAGATTGTAGTTTGGAGATTTCTTCTGAGGTCAAAAGGTTCAGATGTGCTAGCAACAAAGCAGGCCTTGCTATTCATTATCTTGTTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAGCTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATGTTATTTGCTGCTGTACATGCTTGCCAGTCATATAGTTGGTGCATTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAAGCTTGCAGTGACAATGGCAATTTGTGCGATAAAAATTTTCTTTATTGTGGGAACCAGCTCATGAAAGGTTATAGTGCTTGGAATAATAGAAGTCAAGATATTCTAAATTCAGCGTGCTCTGCAGAAGGTGATCCTGCACCTTTCGATTATGGAATTTTTGCGCAAGTCTTGACTTCTGGCATAATTTCATCTAAGAAATTCATCTCTAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTATCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATTTTTGGTCTCATCCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTCACAATTAGGCTCGAGGAAATGAGAGTTAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGGTTACTCCCACAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGCTGGCAACGCGTGGTGTAGATGAAGAAAATTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTCTGTTTGGCCTTAGTGAGGAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATCTGTGAGAGACTGAAACCATGTTTATTTACAGAGCATACTTACATCGTTCGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAGGAAGCGGACTTCTGTGGGGAGGAGCTATTAACCTGGGCCCTGGATCCCAAATCTGGTTCTAATCTCCCATCTTCCACTAGAACAGTTAAAGCATTAATGGAGGTTGAGGCTTTTGCCTTAACAGCCGATGAGTTAAAATTTGTTGCCAGTCAATTTAGACGCCTTCACAGCAGACAGGTTCAACACACTTTCCGATTTTACTCCCAGCAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCTAAAAAGAAACTCATGAAGCTTCGTCAAAAGGAAGAAGATGCTGATGAATCAGAGGGAAGTCATGAAACTGGTGGTGGAAATTCCTACAGCTTTGGTGCTGCCCTGTTAGCCTCTAAGTTTGCTGCGCACACTCTTCGTGGCGTTCATCGTAATCGACTTGCTAAGACTGCCAGGGAGTTGGTGAAACTTCAGAAACCCCCAGAGCCTGATTTCTCTGCAGATGACGCTGACTAA 2211 0.431 MMFDCGRKSEYMGGQRENFLRLEALDSTLSSSSDTGVIKSGFSIDKLGHGGHGSSTTSRSFKRGMRRGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVTSCILAVSIDPLFFYLPVINNSFHCLGIDRKLATIVTTLRTVIDAFYLMHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQIVVWRFLLRSKGSDVLATKQALLFIILFQYVPRFLRMVPLTSELKRTAGVFAETAWAGAACYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNGNLCDKNFLYCGNQLMKGYSAWNNRSQDILNSACSAEGDPAPFDYGIFAQVLTSGIISSKKFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEHTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALMEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKLMKLRQKEEDADESEGSHETGGGNSYSFGAALLASKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFSADDAD 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00025 736 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 730 - -
Vium4328g00025 736 CDD CAP_ED 508 639 IPR000595 -
Vium4328g00025 736 MobiDBLite consensus disorder prediction 717 736 - -
Vium4328g00025 736 FunFam Cyclic nucleotide-gated ion channel 1 435 499 - -
Vium4328g00025 736 Pfam Ion transport protein 109 434 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium4328g00025 736 PRINTS EAG/ELK/ERG potassium channel family signature 471 478 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4328g00025 736 PRINTS EAG/ELK/ERG potassium channel family signature 421 430 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4328g00025 736 PRINTS EAG/ELK/ERG potassium channel family signature 166 175 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4328g00025 736 PRINTS EAG/ELK/ERG potassium channel family signature 403 414 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4328g00025 736 PRINTS EAG/ELK/ERG potassium channel family signature 283 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium4328g00025 736 Gene3D - 113 433 - -
Vium4328g00025 736 SMART cnmp_10 508 639 IPR000595 -
Vium4328g00025 736 Gene3D Helix hairpin bin 436 499 - -
Vium4328g00025 736 Pfam Cyclic nucleotide-binding domain 529 619 IPR000595 -
Vium4328g00025 736 SUPERFAMILY cAMP-binding domain-like 437 628 IPR018490 -
Vium4328g00025 736 SUPERFAMILY Voltage-gated potassium channels 101 430 - -
Vium4328g00025 736 ProSiteProfiles IQ motif profile. 644 673 IPR000048 GO:0005515
Vium4328g00025 736 FunFam Cyclic nucleotide-gated ion channel 1 506 624 - -
Vium4328g00025 736 ProSiteProfiles cAMP/cGMP binding motif profile. 508 592 IPR000595 -
Vium4328g00025 736 Gene3D Jelly Rolls 506 626 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00025 Vium-Chr4328 191238 199352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00025 2 734 Ion Channels AT2G23980 75.632 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00025 K05391 - gmx:100784309 1333.93