Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00020 ATGGTTGAGCGCCGCAGCCCCCAAGCTCTCCCAGACCCGAACCCCGAACCAAATGATTCCGACAAAAAGCCGCACGACGCCAATCAGACACAACGACTAACCGAATCGGCCTCCCCTGCCGAGTCGCAGCGCGACGAGTTACAAAGTTTCGGTGAGCGTCGCACGAAGTCCAATTTAGAAACCCTAGGCGGTGCCGTTACCTCTTCGGTGCAAACCCTTGCTGTGCATCACAATCGCAGTGACGATTTGCACGGGAGCTCTGTTGCGTCGAGTTCCAGTGGCAAAGCCGAAAGTAAGGAGACAGATGCACCTCCTGAAAAAGAAATTATTCAAGGAGAAGCACAACCACTTCCAACTCAGACAAATCGACTTCAGCTGTCGGTGTGTTCAACTCCATTGTCTGAACTGCCACCAACTTCTGTTATACATTCTTCAACATCTGTTTTTAGTCCAACTGTACCAAAACAAAAATTATCTTCTCCAAAGGTCAATAATGCACGTTTGCCAGAAGTAGATAAGAAAAGTTCCTCTGGTGGCAAAACATTATCTGCTGTTTCTGTTGCAAGGTCATCTGCATCTGATGGATATAACTGGCGGAAGTATGGTCAGAAGCAAGTAAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACCCATTCAGACTGTTGTGCTAAGAAGATTGAATGTTGTGATCATTCAGGTCATGTGATAGAGATTGTTTATAAAAGTGAGCACAGTCATGATCCCCCACGGAAGATTAATTCTCTTAGGGAAAATAAGATTCTGTCTGCCAGCAAACCAATTGTAGAAAAAAGTGTTCCAGACCAGCCTGTCAGACTTATGAAGGATCCTGATCCATCCATTTCCTCAAAAGAATCTCTACAAGAAGCACCCTGCAGCACTGATAAGAAACGGCCAAACTCGTCTAGTATGAGTAATGGTAAAATTATTTTGAAAGAGGAACCTATAAATGAGCCAGAGCCGAAAAAAAGAATGAAGAAAGGTGACCTAACAGACATGGATTCTCCTGTAAAACCTGGAAAGAAGCCCAAGTTTGTCATACATGCAGCAGGGGATGTGGGGATATCTGGTGATGGTTATCGATGGCGGAAGTATGGGCAGAAAATGGTGAAGGGAAATCTGCATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTTCGAAAGCACATTGAGACTGCTGTGGATAACGCAAAAACTGTGATTATAACATACAAGGGAGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCAGCTGCAGCACCCGCGTCCATGAACAGTTTGCAGGTGAAGAAACCCGATTCCCCACAGAAGAAGAAAGTTTCTACTCAATGGTCGGTGGACACAGAAGGAGAACTAACTGGGGAAGCCCTTGAGCTTGGGGGGGAGAAAGCAATGGAATCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1512 0.4616 MVERRSPQALPDPNPEPNDSDKKPHDANQTQRLTESASPAESQRDELQSFGERRTKSNLETLGGAVTSSVQTLAVHHNRSDDLHGSSVASSSSGKAESKETDAPPEKEIIQGEAQPLPTQTNRLQLSVCSTPLSELPPTSVIHSSTSVFSPTVPKQKLSSPKVNNARLPEVDKKSSSGGKTLSAVSVARSSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDHSGHVIEIVYKSEHSHDPPRKINSLRENKILSASKPIVEKSVPDQPVRLMKDPDPSISSKESLQEAPCSTDKKRPNSSSMSNGKIILKEEPINEPEPKKRMKKGDLTDMDSPVKPGKKPKFVIHAAGDVGISGDGYRWRKYGQKMVKGNLHPRNYYRCTSAGCPVRKHIETAVDNAKTVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPQKKKVSTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00020 503 MobiDBLite consensus disorder prediction 447 468 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 54 76 - -
Vium4328g00020 503 Pfam WRKY DNA -binding domain 366 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 SUPERFAMILY WRKY DNA-binding domain 190 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 ProSiteProfiles WRKY domain profile. 359 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 451 IPR044810 GO:0003700
Vium4328g00020 503 SMART WRKY_cls 364 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 MobiDBLite consensus disorder prediction 143 163 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 1 122 - -
Vium4328g00020 503 ProSiteProfiles WRKY domain profile. 187 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 SUPERFAMILY WRKY DNA-binding domain 360 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 MobiDBLite consensus disorder prediction 268 351 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 289 316 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 30 45 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 321 349 - -
Vium4328g00020 503 MobiDBLite consensus disorder prediction 143 184 - -
Vium4328g00020 503 Gene3D WRKY domain 178 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 Gene3D WRKY domain 350 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4328g00020 503 MobiDBLite consensus disorder prediction 84 98 - -
Vium4328g00020 503 FunFam WRKY transcription factor 353 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00020 Vium-Chr4328 132894 142098 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00020 148 503 WRKY Transcription Factor Family AT4G30935 57.382 5.26e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4328g00020 WRKY 7.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00020 - - gmx:100127377 739.184