Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4328g00018 | ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTATTCAAGCATTTGGAATCTCAGCAACCAAATACTGATGAGTTTTTTGTATCTGCGTTCTTGAAGCATACGAGTTTAGCATCCTCACAAGCCTACAATTTCTCTGCTTCTGTCTGTTCATGGCAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTGGCTTAGTCTTTTCTGGTATGAACCTCTCTAGCACTGTACCTGATAACACCATAGGCAAGCTAGGCAAACTTCAAACTCTAGATCTTAGCCACAACAATATCACTAGCTTGCCTTCAAATTTTTGGAGCTTAAGCTCCCTCAAGAACCTTAATCTCTCCTCGAATCATATTTCTGGTTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAACTGTTTGCTCACTGCTGAGTCTAAGGGTCCTCAAACTCAACCACAACAGGTTTGCACACAACATACCTTATGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCAGATGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAGGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTGGTTACAACTGGTCTCATTTAGTTTACCTAGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAACATTTGAACGAGTCCTTGAATTTAAAACACATTAATCTTGCACACAATAGATTTACCATGCAGAAATTTCCCCAAATTGAAATGCTCCTGAATTTGGAATATATGAACTTGTCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAATTTGAGTGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCCTCACTGAGGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTAACAGGAGCAGTCCCTCAATCTGTCTTGGAGAAGCTCCCTGGGATGGAGACATACAACTTCTCTTATAATAACCTAACACTTTGTGCTTCTGAAATCAAACCTGAGATCCTGCAAACAGCATTCTTCGGATCATTGAACAGTTGTCCAATTGCTGCAAATCCACGACTCTTCAAAAGAAGAGACAATGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGACTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAACAATCTTCGTACAAAGAAGAACAAAACATTTCAGGTCCATTTTCATTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACTTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGACCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCACGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACCGGATATTGTGTGGCTGGGGACCAAAGAATTGCCATATACGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGTTACTGACATCTTGGAGATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCGTTGGCATTTCTGCATCACGGTTGCTCTCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCGAGGTTGTCTGATTTTGGACTGGCCAAGATTTTCGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCGGAGTTTTCTCAACCAGAATATGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTGTTTGAGCTAGTAACTGGAAAAAAGCCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTGAAAAAGAACCAATCTTCAAATGCTATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCCCTTAAGATTGCTTATCTTTGCACTGCTGACCGTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATTGAACCTACTGCTGATTAG | 2565 | 0.4222 | MGLGVFGSVLVLVLLFKHLESQQPNTDEFFVSAFLKHTSLASSQAYNFSASVCSWQGVSCDANREHVVGLVFSGMNLSSTVPDNTIGKLGKLQTLDLSHNNITSLPSNFWSLSSLKNLNLSSNHISGSLTSNIGNFGLLESIDLSSNNFSEEIPETVCSLLSLRVLKLNHNRFAHNIPYGILKCQSLVSIDLSSNQLNGTLPDGFGASFPKLRILNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGRLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQHLNESLNLKHINLAHNRFTMQKFPQIEMLLNLEYMNLSKTSLVGEIPGKISQLSNLSALDLSLNHLSGKIPSLRNEHLRVLDLSNNNLTGAVPQSVLEKLPGMETYNFSYNNLTLCASEIKPEILQTAFFGSLNSCPIAANPRLFKRRDNGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVKKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADRPFKRPSMQQIVGLLKDIEPTAD | 854 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4328g00018 | 854 | Pfam | Leucine Rich repeat | 377 | 392 | IPR001611 | GO:0005515 | |
Vium4328g00018 | 854 | Pfam | Protein tyrosine and serine/threonine kinase | 552 | 845 | IPR001245 | GO:0004672|GO:0006468 | |
Vium4328g00018 | 854 | Gene3D | Phosphorylase Kinase; domain 1 | 508 | 623 | - | - | |
Vium4328g00018 | 854 | Pfam | Leucine rich repeat | 162 | 222 | IPR001611 | GO:0005515 | |
Vium4328g00018 | 854 | Pfam | Leucine rich repeat | 79 | 125 | IPR001611 | GO:0005515 | |
Vium4328g00018 | 854 | ProSiteProfiles | Leucine-rich repeat profile. | 379 | 400 | IPR001611 | GO:0005515 | |
Vium4328g00018 | 854 | Gene3D | Ribonuclease Inhibitor | 179 | 277 | IPR032675 | - | |
Vium4328g00018 | 854 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 106 | 201 | - | - | |
Vium4328g00018 | 854 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 509 | 623 | - | - | |
Vium4328g00018 | 854 | ProSiteProfiles | Protein kinase domain profile. | 548 | 853 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4328g00018 | 854 | SUPERFAMILY | L domain-like | 228 | 416 | - | - | |
Vium4328g00018 | 854 | SUPERFAMILY | L domain-like | 42 | 278 | - | - | |
Vium4328g00018 | 854 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 228 | 849 | - | - | |
Vium4328g00018 | 854 | Gene3D | Ribonuclease Inhibitor | 30 | 178 | IPR032675 | - | |
Vium4328g00018 | 854 | ProSiteProfiles | Leucine-rich repeat profile. | 91 | 112 | IPR001611 | GO:0005515 | |
Vium4328g00018 | 854 | SMART | LRR_typ_2 | 160 | 184 | IPR003591 | - | |
Vium4328g00018 | 854 | SMART | LRR_typ_2 | 185 | 208 | IPR003591 | - | |
Vium4328g00018 | 854 | SMART | LRR_typ_2 | 89 | 111 | IPR003591 | - | |
Vium4328g00018 | 854 | SMART | LRR_typ_2 | 378 | 401 | IPR003591 | - | |
Vium4328g00018 | 854 | SMART | LRR_typ_2 | 112 | 136 | IPR003591 | - | |
Vium4328g00018 | 854 | SUPERFAMILY | Protein kinase-like (PK-like) | 534 | 846 | IPR011009 | - | |
Vium4328g00018 | 854 | FunFam | Calmodulin-binding receptor kinase CaMRLK | 255 | 374 | - | - | |
Vium4328g00018 | 854 | Gene3D | Transferase(Phosphotransferase) domain 1 | 624 | 853 | - | - | |
Vium4328g00018 | 854 | Gene3D | Ribonuclease Inhibitor | 278 | 444 | IPR032675 | - | |
Vium4328g00018 | 854 | PRINTS | Leucine-rich repeat signature | 92 | 105 | - | - | |
Vium4328g00018 | 854 | PRINTS | Leucine-rich repeat signature | 355 | 368 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4328g00018 | Vium-Chr4328 | 116193 | 119785 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4328g00018 | 70 | 849 | Receptor kinase-like Gene Family | AT5G07280 | 32.416 | 1.70e-113 | 372 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-2 | Vium4328g00018 | PK_Tyr_Ser-Thr | 1.7e-31 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4328g00018 | - | - | gmx:100797738 | 1507.66 |