Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00018 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTATTCAAGCATTTGGAATCTCAGCAACCAAATACTGATGAGTTTTTTGTATCTGCGTTCTTGAAGCATACGAGTTTAGCATCCTCACAAGCCTACAATTTCTCTGCTTCTGTCTGTTCATGGCAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTGGCTTAGTCTTTTCTGGTATGAACCTCTCTAGCACTGTACCTGATAACACCATAGGCAAGCTAGGCAAACTTCAAACTCTAGATCTTAGCCACAACAATATCACTAGCTTGCCTTCAAATTTTTGGAGCTTAAGCTCCCTCAAGAACCTTAATCTCTCCTCGAATCATATTTCTGGTTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAACTGTTTGCTCACTGCTGAGTCTAAGGGTCCTCAAACTCAACCACAACAGGTTTGCACACAACATACCTTATGGGATTCTCAAGTGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCAGATGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAGGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTGGTTACAACTGGTCTCATTTAGTTTACCTAGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAACATTTGAACGAGTCCTTGAATTTAAAACACATTAATCTTGCACACAATAGATTTACCATGCAGAAATTTCCCCAAATTGAAATGCTCCTGAATTTGGAATATATGAACTTGTCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAATTTGAGTGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCCTCACTGAGGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTAACAGGAGCAGTCCCTCAATCTGTCTTGGAGAAGCTCCCTGGGATGGAGACATACAACTTCTCTTATAATAACCTAACACTTTGTGCTTCTGAAATCAAACCTGAGATCCTGCAAACAGCATTCTTCGGATCATTGAACAGTTGTCCAATTGCTGCAAATCCACGACTCTTCAAAAGAAGAGACAATGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGACTTTTGTTTCTAGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAACAATCTTCGTACAAAGAAGAACAAAACATTTCAGGTCCATTTTCATTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACTTCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGACCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCACGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACCGGATATTGTGTGGCTGGGGACCAAAGAATTGCCATATACGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGTTACTGACATCTTGGAGATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCGTTGGCATTTCTGCATCACGGTTGCTCTCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCGAGGTTGTCTGATTTTGGACTGGCCAAGATTTTCGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCGGAGTTTTCTCAACCAGAATATGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTGTTTGAGCTAGTAACTGGAAAAAAGCCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTGAAAAAGAACCAATCTTCAAATGCTATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCCCTTAAGATTGCTTATCTTTGCACTGCTGACCGTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATTGAACCTACTGCTGATTAG 2565 0.4222 MGLGVFGSVLVLVLLFKHLESQQPNTDEFFVSAFLKHTSLASSQAYNFSASVCSWQGVSCDANREHVVGLVFSGMNLSSTVPDNTIGKLGKLQTLDLSHNNITSLPSNFWSLSSLKNLNLSSNHISGSLTSNIGNFGLLESIDLSSNNFSEEIPETVCSLLSLRVLKLNHNRFAHNIPYGILKCQSLVSIDLSSNQLNGTLPDGFGASFPKLRILNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGRLEVLDISRNQFQGHIPQVLYNFSGYNWSHLVYLDLSENKLSGEFFQHLNESLNLKHINLAHNRFTMQKFPQIEMLLNLEYMNLSKTSLVGEIPGKISQLSNLSALDLSLNHLSGKIPSLRNEHLRVLDLSNNNLTGAVPQSVLEKLPGMETYNFSYNNLTLCASEIKPEILQTAFFGSLNSCPIAANPRLFKRRDNGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVKKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADRPFKRPSMQQIVGLLKDIEPTAD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00018 854 Pfam Leucine Rich repeat 377 392 IPR001611 GO:0005515
Vium4328g00018 854 Pfam Protein tyrosine and serine/threonine kinase 552 845 IPR001245 GO:0004672|GO:0006468
Vium4328g00018 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Vium4328g00018 854 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Vium4328g00018 854 Pfam Leucine rich repeat 79 125 IPR001611 GO:0005515
Vium4328g00018 854 ProSiteProfiles Leucine-rich repeat profile. 379 400 IPR001611 GO:0005515
Vium4328g00018 854 Gene3D Ribonuclease Inhibitor 179 277 IPR032675 -
Vium4328g00018 854 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 201 - -
Vium4328g00018 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Vium4328g00018 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4328g00018 854 SUPERFAMILY L domain-like 228 416 - -
Vium4328g00018 854 SUPERFAMILY L domain-like 42 278 - -
Vium4328g00018 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 849 - -
Vium4328g00018 854 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Vium4328g00018 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vium4328g00018 854 SMART LRR_typ_2 160 184 IPR003591 -
Vium4328g00018 854 SMART LRR_typ_2 185 208 IPR003591 -
Vium4328g00018 854 SMART LRR_typ_2 89 111 IPR003591 -
Vium4328g00018 854 SMART LRR_typ_2 378 401 IPR003591 -
Vium4328g00018 854 SMART LRR_typ_2 112 136 IPR003591 -
Vium4328g00018 854 SUPERFAMILY Protein kinase-like (PK-like) 534 846 IPR011009 -
Vium4328g00018 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 374 - -
Vium4328g00018 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Vium4328g00018 854 Gene3D Ribonuclease Inhibitor 278 444 IPR032675 -
Vium4328g00018 854 PRINTS Leucine-rich repeat signature 92 105 - -
Vium4328g00018 854 PRINTS Leucine-rich repeat signature 355 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00018 Vium-Chr4328 116193 119785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00018 70 849 Receptor kinase-like Gene Family AT5G07280 32.416 1.70e-113 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vium4328g00018 PK_Tyr_Ser-Thr 1.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00018 - - gmx:100797738 1507.66