Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00014 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATGCATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCCTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGAGAGTCAGATGGCAAGTATAATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCACTTTCTGAGGTCTAGTGAAAGCTGGCTCTCGCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATTTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGCAGGCTCCTCACGAGCTTTTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGCCATCCCGTGTTTAGAATTTATGGACAAGATCCCTTTAATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCGAAAAGAGGCAAAAATGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAATCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCTTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACACCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTCTTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCACCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCGCCTCCTCCACCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGAACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTTTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTATAGCTCCTTCCCCTCCTCCTGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGAACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGTCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTTCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAGCACTGGAAGATTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTAATTGA 3195 0.4538 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDAWKEGNYNYKEYMDGIVGQLKENSPDASILIFNFREEGTESQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFILAALLIYRKAYTGEQRTLDMVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFNADKVHKMLYSTPKRGKNVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTPPVTDMSRKEDNTNKFEGIPQQPSTPNNICQESTRSSKRTSESNKCPTRPTNLDIKQQAPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSSYVVPLQSKHQSQDRSHSSISIPTPDTQLSPTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDHRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDEPSPPLSLKEEQPTRFKPPCFSGQVAGFTIVPPPPPPPLSSEVLYSNCTNSSLQKSIAPSPPPGAPAPPPPPGEPAPPPPPGAPVPPPPPGAPAPPPPPGAPSPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEDSALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGN 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 719 808 - -
Vium4328g00014 1064 SMART PTEN_C2_2 197 336 IPR014020 -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 599 637 - -
Vium4328g00014 1064 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vium4328g00014 1064 ProSiteProfiles Formin homology-2 (FH2) domain profile. 841 1064 IPR015425 -
Vium4328g00014 1064 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 408 424 - -
Vium4328g00014 1064 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 568 846 - -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 702 718 - -
Vium4328g00014 1064 Gene3D - 196 340 - -
Vium4328g00014 1064 Gene3D Formin, FH2 domain 839 1064 IPR042201 -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 437 554 - -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 818 846 - -
Vium4328g00014 1064 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 187 IPR029021 -
Vium4328g00014 1064 PANTHER FORMIN-J 2 701 - -
Vium4328g00014 1064 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vium4328g00014 1064 Pfam Formin Homology 2 Domain 845 1064 IPR015425 -
Vium4328g00014 1064 SUPERFAMILY Formin homology 2 domain (FH2 domain) 916 1064 - -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 393 554 - -
Vium4328g00014 1064 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00014 Vium-Chr4328 62558 73229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00014 1 405 FH2 protein (formin) Gene Family AT2G25050 59.559 1.59e-176 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00014 - - var:108329436 1368.21