Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00013 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATGCATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCCTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGAGAGTCAGATGGCAAGTATAATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCACTTTCTGAGGTCTAGTGAAAGCTGGCTCTCGCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATTTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGCAGGCTCCTCACGAGCTTTTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGCCATCCCGTGTTTAGAATTTATGGACAAGATCCCTTTAATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCGAAAAGAGGCAAAAATGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAATCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCTTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACACCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTCTTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCACCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCGCCTCCTCCACCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGAACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTTTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTATAGCTCCTTCCCCTCCTCCTGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGAACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGTCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTTCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAGCACTGGAAGATTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACACGGGCACGGGACAAAAAGTTGACTCTTATGCACTATCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCCTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCTATATCAGAAACTTTCCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTGGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGGTGTGTGA 3615 0.4526 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDAWKEGNYNYKEYMDGIVGQLKENSPDASILIFNFREEGTESQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFILAALLIYRKAYTGEQRTLDMVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFNADKVHKMLYSTPKRGKNVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTPPVTDMSRKEDNTNKFEGIPQQPSTPNNICQESTRSSKRTSESNKCPTRPTNLDIKQQAPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSSYVVPLQSKHQSQDRSHSSISIPTPDTQLSPTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDHRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDEPSPPLSLKEEQPTRFKPPCFSGQVAGFTIVPPPPPPPLSSEVLYSNCTNSSLQKSIAPSPPPGAPAPPPPPGEPAPPPPPGAPVPPPPPGAPAPPPPPGAPSPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEDSALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFRKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQGV 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 719 808 - -
Vium4328g00013 1204 SMART PTEN_C2_2 197 336 IPR014020 -
Vium4328g00013 1204 Coils Coil 1121 1145 - -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 599 637 - -
Vium4328g00013 1204 SUPERFAMILY Formin homology 2 domain (FH2 domain) 782 1199 - -
Vium4328g00013 1204 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vium4328g00013 1204 ProSiteProfiles Formin homology-2 (FH2) domain profile. 841 1204 IPR015425 -
Vium4328g00013 1204 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium4328g00013 1204 Gene3D Formin, FH2 domain 839 1203 IPR042201 -
Vium4328g00013 1204 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 187 IPR029021 -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 408 424 - -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 568 846 - -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 702 718 - -
Vium4328g00013 1204 Pfam Formin Homology 2 Domain 845 1202 IPR015425 -
Vium4328g00013 1204 SMART it6_source 394 1202 IPR015425 -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 437 554 - -
Vium4328g00013 1204 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vium4328g00013 1204 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 818 846 - -
Vium4328g00013 1204 Gene3D - 196 340 - -
Vium4328g00013 1204 PANTHER FORMIN-J 2 701 - -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 393 554 - -
Vium4328g00013 1204 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00013 Vium-Chr4328 60298 73229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00013 788 1204 Protein tyrosine phosphatase (PTP) family AT5G58160 67.225 3.63e-179 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00013 - - var:108329436 1368.21