Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00011 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATGCATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCCTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGAGAGTCAGATGGCAAGTATAATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCACTTTCTGAGGTCTAGTGAAAGCTGGCTCTCGCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATTTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGCAGGCTCCTCACGAGCTTTTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGCCATCCCGTGTTTAGAATTTATGGACAAGATCCCTTTAATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCGAAAAGAGGCAAAAATGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAATCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCTTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACACCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTCTTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCACCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCGCCTCCTCCACCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGAACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTTTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTATAGCTCCTTCCCCTCCTCCTGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGAACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGTCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTTCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAGCACTGGAAGATTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACACGGGCACGGGACAAAAAGTTGACTCTTATGCACTATCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCCTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCTATATCAGAAACTTTCCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTGGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGGATTTTACCTACACCTATCCCGACTGGCAATGTCAAATAG 3768 0.4496 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDAWKEGNYNYKEYMDGIVGQLKENSPDASILIFNFREEGTESQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFILAALLIYRKAYTGEQRTLDMVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFNADKVHKMLYSTPKRGKNVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTPPVTDMSRKEDNTNKFEGIPQQPSTPNNICQESTRSSKRTSESNKCPTRPTNLDIKQQAPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSSYVVPLQSKHQSQDRSHSSISIPTPDTQLSPTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDHRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDEPSPPLSLKEEQPTRFKPPCFSGQVAGFTIVPPPPPPPLSSEVLYSNCTNSSLQKSIAPSPPPGAPAPPPPPGEPAPPPPPGAPVPPPPPGAPAPPPPPGAPSPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEDSALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFRKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTPIPTGNVK 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 719 808 - -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 1236 1255 - -
Vium4328g00011 1255 Coils Coil 1121 1145 - -
Vium4328g00011 1255 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Vium4328g00011 1255 Gene3D Formin, FH2 domain 839 1225 IPR042201 -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 702 718 - -
Vium4328g00011 1255 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Vium4328g00011 1255 SMART it6_source 394 1255 IPR015425 -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 818 846 - -
Vium4328g00011 1255 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Vium4328g00011 1255 Gene3D - 196 340 - -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 393 554 - -
Vium4328g00011 1255 SMART PTEN_C2_2 197 336 IPR014020 -
Vium4328g00011 1255 PANTHER FORMIN-J 753 1240 - -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 599 637 - -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 408 424 - -
Vium4328g00011 1255 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 187 IPR029021 -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 568 846 - -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 437 554 - -
Vium4328g00011 1255 ProSiteProfiles Formin homology-2 (FH2) domain profile. 841 1240 IPR015425 -
Vium4328g00011 1255 Pfam Formin Homology 2 Domain 845 1214 IPR015425 -
Vium4328g00011 1255 SUPERFAMILY Formin homology 2 domain (FH2 domain) 916 1242 - -
Vium4328g00011 1255 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Vium4328g00011 1255 MobiDBLite consensus disorder prediction 568 586 - -
Vium4328g00011 1255 Coils Coil 1215 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00011 Vium-Chr4328 59733 73229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00011 788 1238 Protein tyrosine phosphatase (PTP) family AT5G58160 67.478 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00011 - - var:108329436 1368.21