Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00008 ATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTTGATTGCTGCTTCACCACGGATGCATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCCTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGAGAGTCAGATGGCAAGTATAATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCACTTTCTGAGGTCTAGTGAAAGCTGGCTCTCGCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATTTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATGGTTTACAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGCCATCCCGTGTTTAGAATTTATGGACAAGATCCCTTTAATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCGAAAAGAGGCAAAAATGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGACGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCTAATATTTTGATGCTTAATCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGTTGCCTTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACACCCCCAGTTACTGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTTCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGACATAAAACAGCAAGCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTCTTATGTTGTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCACCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCAACCCAATCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTCCCCTTCACGACCTCCAACTCCGCCTCCTCCACCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGAACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTTTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCACCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTATAGCTCCTTCCCCTCCTCCTGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGAACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGTCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGCACCTTCCCCTTCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCGCCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAGCACTGGAAGATTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCAGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACACGGGCACGGGACAAAAAGTTGACTCTTATGCACTATCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCCTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCTATATCAGAAACTTTCCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTGGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGGATTTTACCTACACCTATCCCGACTGGCAATGTCAAATAG 3684 0.4487 MLRKLFFRKPPDGLLEICERVHVFDCCFTTDAWKEGNYNYKEYMDGIVGQLKENSPDASILIFNFREEGTESQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFILAALLIYRKAYTGEQRTLDMVYRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFNADKVHKMLYSTPKRGKNVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIMFNTAFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTPPVTDMSRKEDNTNKFEGIPQQPSTPNNICQESTRSSKRTSESNKCPTRPTNLDIKQQAPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSSYVVPLQSKHQSQDRSHSSISIPTPDTQLSPTFHSKSLADTISCPSASTITSTQSSPSLSSKNVDEIPPIKTRIESSPSRPPTPPPPPTPPLNDHRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDEPSPPLSLKEEQPTRFKPPCFSGQVAGFTIVPPPPPPPLSSEVLYSNCTNSSLQKSIAPSPPPGAPAPPPPPGEPAPPPPPGAPVPPPPPGAPAPPPPPGAPSPSSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLALEDSALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEIRNSVKLKRIMHTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFRKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTPIPTGNVK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 571 609 - -
Vium4328g00008 1227 Gene3D Formin, FH2 domain 811 1197 IPR042201 -
Vium4328g00008 1227 SUPERFAMILY Formin homology 2 domain (FH2 domain) 888 1214 - -
Vium4328g00008 1227 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 174 309 IPR035892 -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 540 818 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 380 396 - -
Vium4328g00008 1227 Gene3D Protein tyrosine phosphatase superfamily 13 170 IPR029021 -
Vium4328g00008 1227 Pfam Formin Homology 2 Domain 817 1186 IPR015425 -
Vium4328g00008 1227 ProSiteProfiles Formin homology-2 (FH2) domain profile. 813 1212 IPR015425 -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 409 526 - -
Vium4328g00008 1227 SMART PTEN_C2_2 169 308 IPR014020 -
Vium4328g00008 1227 Gene3D - 171 312 - -
Vium4328g00008 1227 SMART it6_source 366 1227 IPR015425 -
Vium4328g00008 1227 Coils Coil 1187 1214 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 540 558 - -
Vium4328g00008 1227 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 58 162 IPR029021 -
Vium4328g00008 1227 Coils Coil 1093 1117 - -
Vium4328g00008 1227 ProSiteProfiles C2 tensin-type domain profile. 171 309 IPR014020 -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 691 780 - -
Vium4328g00008 1227 PANTHER FORMIN-J 725 1212 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 674 690 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 1208 1227 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 790 818 - -
Vium4328g00008 1227 MobiDBLite consensus disorder prediction 365 526 - -
Vium4328g00008 1227 Pfam C2 domain of PTEN tumour-suppressor protein 172 308 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00008 Vium-Chr4328 59733 73229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00008 760 1210 Protein tyrosine phosphatase (PTP) family AT5G58160 67.478 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00008 - - var:108329436 1297.34