Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4328g00004 ATGAGTGAGAAAGAGAAAGAGAAAGAGAAAGGTGTGGGCGAGGGACAATCGACGTTGCTTCACGGGAAGTATGAGCTGGGTAGGGTGTTGGGGCATGGAACGTTCGCGAAGGTGTACCACGCGCGGAATCTTAAGACGGGGCAGCACGTGGCCATGAAGGTGGTGGGGAAGGAGAAGGTGATAAAGGTTGGGATGATGGAGCAGGTAAAGAGGGAGATATCGGTGATGAAAATGGTGAAACACTCCAACATCGTCGAACTCCACGAAGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAACTCGTGCGCGGCGGAGAGCTCTTCAACAAGGTATCCAAAGGTCGGTTGAAGGAGGACGTCGCCAGACTCTACTTCCAGCAGTTGATCTCCGCGGTCGACTTCTGCCACAGCCGCGGAGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTTCTCGACGAACACGGCAACCTCAAGGTCTCCGACTTCGGACTCACCGCCTTCTCCGACCACCTCAAGGAGGATGGGCTGCTGCACACCACGTGTGGCACGCCCGCGTACGTGTCGCCGGAGGTCATAGCGAAGAAAGGTTACGACGGTGCCAAGGCTGACATATGGTCGTGTGGGGTCATCCTCTACGTCCTCCTGGCAGGGTTTCTACCCTTTCAGGATGATAATTTGGTTGCCATGTATAAGAAAATTTACAGAGGAGACTTCAAGTGTCCACCTTGGTTTTCCGTGGAGGCGCGAAGGCTTGTTACCAGACTCCTCGACCCCAACCCGAATTCCCGGATTAGTATCAGTAAAGTCATGGAGTCTTCCTGGTTTAAGAAACCGGTGCCGAGGAAGGTGGAGGAGGTGGCGAAGGTGGATTTGGAGGAGATGTGTGAGAGGCCTGCCACCATGAACGCGTTTCACATAATATCGTTGTCGGAGGGGTTCGATTTGTCGCCCCTGTTTGAGGAGAAGAAGAGGGAGGAGATGAGGTTCGCGACGGCGGGGACGGCCAGCAGCGTGATATCGCGGCTGGAGGAGGTGGCGAAGGCGGGGAAGTTCGACGTGAAAAGTAGCGAGACGAAGGTAAGGCTTCAGGGGCAGGAGCGTGGGAGGAAGGGAAAGCTGGCTATTGCGGCGGATATTTACGCCGTGACACCGTCCTTTATGGTGGTGGAAGTGAAGAAGGACAACGGAGATACCCTGGAGTACAACCAGTTCTGCAGCAAGCAGCTTCGTCCTGCGCTTAAAGACATCTTCTGGAATTCCCCACAGAATTCCACACCTGCAATAGTGCTTGAGTGA 1305 0.5487 MSEKEKEKEKGVGEGQSTLLHGKYELGRVLGHGTFAKVYHARNLKTGQHVAMKVVGKEKVIKVGMMEQVKREISVMKMVKHSNIVELHEVMASKSKIYIAMELVRGGELFNKVSKGRLKEDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLTAFSDHLKEDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSVEARRLVTRLLDPNPNSRISISKVMESSWFKKPVPRKVEEVAKVDLEEMCERPATMNAFHIISLSEGFDLSPLFEEKKREEMRFATAGTASSVISRLEEVAKAGKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKQLRPALKDIFWNSPQNSTPAIVLE 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4328g00004 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vium4328g00004 434 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Vium4328g00004 434 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4328g00004 434 FunFam Non-specific serine/threonine protein kinase 14 303 - -
Vium4328g00004 434 SMART serkin_6 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4328g00004 434 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Vium4328g00004 434 CDD CIPK_C 305 417 - -
Vium4328g00004 434 Gene3D Transferase(Phosphotransferase) domain 1 104 282 - -
Vium4328g00004 434 Gene3D Phosphorylase Kinase; domain 1 16 103 - -
Vium4328g00004 434 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4328g00004 434 Gene3D Kinase associated domain 1, KA1 298 422 - -
Vium4328g00004 434 CDD STKc_SnRK3 23 277 - -
Vium4328g00004 434 ProSitePatterns Protein kinases ATP-binding region signature. 30 57 IPR017441 GO:0005524
Vium4328g00004 434 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Vium4328g00004 434 Pfam NAF domain 301 357 IPR004041 GO:0007165
Vium4328g00004 434 FunFam Non-specific serine/threonine protein kinase 299 421 - -
Vium4328g00004 434 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4328g00004 Vium-Chr4328 36574 38437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4328g00004 6 430 CBL-interacting serine-threonine protein kinases AT4G30960 72.789 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium4328g00004 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4328g00004 - K07198 var:108321114 848.195