Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4327g00001 ATGGCGTCTTCATTATCAGCTCAATTTGTTCATTGTCAGAACTCACTTCCACGGGCTCAGGGTAATTTGAGCCGAGATGTGTCAAAGGTTCAAAGGCCACGTGTTGTCTGTTGCGTTACAGGGTCACGGCTTGGTTACGGTAAAACATTGGCATCTAGGTCACACTATGCCTTGAGGTTCCCTGTGAGGCAACAATCTGAAGCAAGGTCAATTAGATACAGGAGCATGACATGTGTCAGCGCCACAGACAATGCTCTAGAGCTTCAAGCCAAGGTGACAACCAAGTGTTTCTTTGACATAGAAGTTGGGGGTGAGGCTGCTGGCAGGATTGTTTTGGGCCTATTTGGAGATGATGTTCCCAAAACAGCTGAAAATTTCCGTGCTTTGTGCACAGGTGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGAGGAGACTTTACGGAAGGAAACGGAACTGGTGGAATTAGTATCTATGGTCCAAGTTTTAAAGATGAGAGTTTTGCCTTGAAGCATACTGGTCCTGGAGTTCTAAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAATTTTTCATTTGCACTGTAAAGACTCAATGGCTAGACAATCGTCACGTTGTTTTTGGACAAGTCATTGATGGCATGGATGTTGTTAGGACACTTGAATCCCAGGAGACGAGTAAATTAGATGTCCCTCGGAAGCCTTGCAGAATTGTTAACTGCGGAGAACTTATAGATGGTTGA 777 0.4427 MASSLSAQFVHCQNSLPRAQGNLSRDVSKVQRPRVVCCVTGSRLGYGKTLASRSHYALRFPVRQQSEARSIRYRSMTCVSATDNALELQAKVTTKCFFDIEVGGEAAGRIVLGLFGDDVPKTAENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGPSFKDESFALKHTGPGVLSMANAGPNTNGSQFFICTVKTQWLDNRHVVFGQVIDGMDVVRTLESQETSKLDVPRKPCRIVNCGELIDG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4327g00001 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 98 253 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 254 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 95 255 - -
Vium4327g00001 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
Vium4327g00001 258 Gene3D - 83 257 IPR029000 -
Vium4327g00001 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413|GO:0003755
Vium4327g00001 258 FunFam Peptidyl-prolyl cis-trans isomerase 82 257 - -
Vium4327g00001 258 CDD cyclophilin_ABH_like 95 253 - -
Vium4327g00001 258 SUPERFAMILY Cyclophilin-like 88 255 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4327g00001 Vium-Chr4327 14521 16921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4327g00001 63 257 U-box Gene Family AT5G67530 38.191 1.04e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4327g00001 K03768 - gmx:100785805 435.647