Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4326g00011 ATGGCAGAGAATGTAGTTTCCTTTGTTATAGATCACTTAGGCCAGCTTGCCGCACGAGAAGCTTACTTGCTGTATGGCGTGGAGGACAGAGTCCAGTCTCTCCAGTACGAACTTCAAATGATCAAAGACCTCCTCAACACCACAAAGAGAAAGAAGGGAATGGAACATACTGTATTGAACCAAATCAGAGATGTGGCCCAAGTAGCTGAGGATGTCATCGACACATTCGTAGCAAAAGTTGCCATTTACAATAGGAGAACCGTTCTGGGGAGGATGCTCCATGGCTTTGGCCAAGCAAGGTTGCTCCACGACGTAGCCCAAAAAATAGACAAGCTCAAAACCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTCAGAGAAGCCACTAATCAATCCGCAACAGAAGATGAGGAGGAGGAGAAAAGGTTGCAATCGCTGCACAAGCTAAGAAGAGACGTGGAGGAAGAACATGCGGTGGGCTTTGACCAGGACTCCAAGGATGTCGTCAAGCGACTCTTGGAAGGTGATTCAAATTGTAAAGCTATCTCTATCGTTGGCATGGGGGGATTGGGAAAGACCACTCTTGCCCGAAAGGTCTATAATAGCGACCAGGTGAAGAACCACTTTGATTGTCACGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTTAAGGAGCTTTTGCTTGGCCTTCTTAAGCATCTGATGCCAAAGTCTGAACAACAACGCAGAGGCAACAAGAAGGGTAAGAAAAGCGTCGAAGACATTAACAGCCTGAGTGAGGAAGAGCTGAAGAAACAGGTGCGGAACTGCTTGGAGAGGAAAATGTATCTTGTGGTGATAGATGACTTGTGGAAAACGCAGGATTGGGACGAGGTGCAAGATGCTTTTCCAAACAACAACAGAGGCAGCAGAATATTGATAACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTTCTGAGTGAAGAAGAAAGTTGGGAGTTGTTTTGCAGGAAAGTGTTTAAGGGTGAAAACTGCCCTTCTGATTTGGAGACCCTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTTTTAGCAGGGATGCTAGCGAAGAAGGAAAAGTCAAATAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGATGAGACCCAAGTGAAGGATATAGTTCTGAAGCTCAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGCTTATTTCCTGAAGATTTTGAAATACCTGTTACGCCATTATTGCAAAAATGGGTTGCGGAGGGTTTCATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAGGTAGCAAGAGTGAAGTTTAATGGAGGTTATGAGAGGTGTCAGGTTCATGATCTTCTTCGAGATCTTTGCATTTCAGAGAGCAAAGAGGACAAAGTGTTTGATGTTTGCACAAACAATAACATTCTAATCCCTACTAAACCTCGCATACTGTCCATTCACAGTGACATGGGTCACTACATTTCTTCAAGCAACAATAATCATTCATGTATGCGTTCCCTGTTTTTCTTTGGTCCAGAGTATGATGTTGGTGGGAGAGAGTGGAAATGGCTTTTGGATGACTTCAAATTGGTTCGAGTCTTAGAGTTTGGACATAACAGGTGCCCAGAGATTCCTTCCAATTTAGGGAACTTCGTCCACTTAAGGTACTTGAGAATAAACTCAACTCGTGCTACATTTGTTCCAGATTCAATACTTGACCTTTGGAATCTACAAACCATAGACTTGGGTATTTTAGGGTATGACAGTCCAATTTCTTTTCCTATTCAAATGTGGAAACTCAAACATTTAAGGCATTTGAATACATCAAGGCCTATCAAGTTGCGAGGAGGATACTCAGAATCAAACGAGAAGATGTGGGATCTTCAAACCATCTCTCCCCTTATACTCAACACACAAGCAACATCTCTAATAAAGAAAGGAACATTTCCCAATATTAAGAAGATGGGGTTGTACATGGAGACCGACGGTTTTGAAGGTGAATTACCCAATTTATTGCAATACCTACAACAATTAAAGCATTTGAATACATTGATGATTTATAATGTCTTAGACCTTCTAACCTCTGAGGTCATATTTCCCCCAAGCATTACAGAGTTATGGTTATCTAGGATTAAGTGCATCACTGATGAGGGTATGAATGGTTTGAGAAATCACTCCAAAATCAAAATTTTGAGACTTTTGGGTGTTGAATGGTCTAAGAGTTCCATTGACCTCAATTGTGGGGATGGCGGCTTCCCACAGCTGGAAGTGTTGGAAATGAAATATTTGTCAATTCGAAAGTGCAAATTATGTAATGGTGCAATGCATAGACTTCAAAATGTGAGTATCCAGTGTTGTTAA 2505 0.4244 MAENVVSFVIDHLGQLAAREAYLLYGVEDRVQSLQYELQMIKDLLNTTKRKKGMEHTVLNQIRDVAQVAEDVIDTFVAKVAIYNRRTVLGRMLHGFGQARLLHDVAQKIDKLKTTLNEIRDNKDKYDAFREATNQSATEDEEEEKRLQSLHKLRRDVEEEHAVGFDQDSKDVVKRLLEGDSNCKAISIVGMGGLGKTTLARKVYNSDQVKNHFDCHAWVYVSNECRVKELLLGLLKHLMPKSEQQRRGNKKGKKSVEDINSLSEEELKKQVRNCLERKMYLVVIDDLWKTQDWDEVQDAFPNNNRGSRILITSRLKEVALHAGDDVPHYLQFLSEEESWELFCRKVFKGENCPSDLETLGKQMVQSCRGLPLSIIVLAGMLAKKEKSNREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVARVKFNGGYERCQVHDLLRDLCISESKEDKVFDVCTNNNILIPTKPRILSIHSDMGHYISSSNNNHSCMRSLFFFGPEYDVGGREWKWLLDDFKLVRVLEFGHNRCPEIPSNLGNFVHLRYLRINSTRATFVPDSILDLWNLQTIDLGILGYDSPISFPIQMWKLKHLRHLNTSRPIKLRGGYSESNEKMWDLQTISPLILNTQATSLIKKGTFPNIKKMGLYMETDGFEGELPNLLQYLQQLKHLNTLMIYNVLDLLTSEVIFPPSITELWLSRIKCITDEGMNGLRNHSKIKILRLLGVEWSKSSIDLNCGDGGFPQLEVLEMKYLSIRKCKLCNGAMHRLQNVSIQCC 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4326g00011 834 FunFam Probable disease resistance protein At5g66910 332 419 - -
Vium4326g00011 834 CDD RX-CC_like 2 121 IPR038005 -
Vium4326g00011 834 Gene3D - 5 96 - -
Vium4326g00011 834 Gene3D - 148 326 IPR027417 -
Vium4326g00011 834 Gene3D - 418 508 IPR036388 -
Vium4326g00011 834 Coils Coil 140 160 - -
Vium4326g00011 834 Gene3D Ribonuclease Inhibitor 574 834 IPR032675 -
Vium4326g00011 834 PRINTS Disease resistance protein signature 185 200 - -
Vium4326g00011 834 PRINTS Disease resistance protein signature 367 381 - -
Vium4326g00011 834 PRINTS Disease resistance protein signature 274 288 - -
Vium4326g00011 834 FunFam Probable disease resistance protein At1g61300 144 327 - -
Vium4326g00011 834 Pfam Rx N-terminal domain 5 80 IPR041118 -
Vium4326g00011 834 FunFam Probable disease resistance protein At1g63360 418 507 - -
Vium4326g00011 834 Gene3D - 332 417 IPR042197 -
Vium4326g00011 834 SUPERFAMILY L domain-like 496 833 - -
Vium4326g00011 834 Pfam NB-ARC domain 169 420 IPR002182 GO:0043531
Vium4326g00011 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 432 IPR027417 -
Vium4326g00011 834 PANTHER DISEASE RESISTANCE PROTEIN RP 33 817 IPR044974 GO:0006952
Vium4326g00011 834 Coils Coil 102 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4326g00011 Vium-Chr4326 59671 62373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4326g00011 184 504 WRKY Transcription Factor Family AT5G45050 23.765 2.00e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4326g00011 - - vra:106779070 1266.91