Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium431g00004 ATGAGAAATCCAACGTTACTGGTTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGTTTCCGCAAGTCTGAGTTTGACTGGGTTTCCAAGTTAATGCACTCAATCTGTAGCATTTTTATTGTGTTGTGGAGCACCCCATTGTTGATATCAACTGTGACGTTTGGTACCGCGCTTTTGCTTGGAGTTCCACTTGATGCAGGCACGGTTTTCACCACCACATCTGTATTTAAGATCCTGCAGGAACCTATTATATCCTTTCCTCAGAGTATGATATCTCTTTCACAAGCGCTGGTATCACTTGGGCGGTTAGATGGGTACATGTCTAGCACAGAATTATTGGATGATTCGGTTGAGAGAGAGGAAGGTTGTGGTGGACGCATTGCTGTGCAGGTCAGAGACGGAACTTTTAGCTGGGATGATCATGGCCAGCTGCAAGACTTGAAAAACATTAATTTGGAGATTAATAAAGGGGAGCTCACAGCAATTGTTGGGACTGTGGGATCGGGGAAATCTTCACTTCTTGCTTCAATTCTTGGTGAGATGCACAAAATTTCTGGGAAGATTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACATCTTGGATTCAAAACGGGACCATTGAGGAAAACATTCTCTTTGGCTTACCAATGAACAGGCAGAAGTACAATGAAGTGGTCAGAGATTGTAGCTTGGAGAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGTCAGAAGCAGCGCATACAGCTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTTCTTGATGATGTTTTCAGTGCTGTAGATGCACATACTGGTACTGAAATATTCAAGGAATGTGTGAGAGGGTCTCTTAAAGGCAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACAGAATGTGGTTCTTATAGTGGTGATGAGGGATGGAACGATAGTACAATCAGGGAAGTACAATGATCTACTTGCTTCTGGAATGGATTTTAGTGCTCTTGTTGCAGCACATGAGACATGTATGAAACTAATGGAGCAAGGTGCGGTCGTGCCTGACAATCTGAACAAACAAATGAAATCACCGAAGGCAGCTTCTAATAACAGAGAAACAAATGGTGAAATCAATCCTCTTGACCAGCTCAAGTCTGACAATGAAGGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTCATATATGTAAACTTTACTGCACAGAGGCTTTCGGGTGGTGGGGCATTGGGGGAGTAATCTTTCTTTCTGTGTTGTGGCAAGCTTCTACGGTAGCGAGTGATTATTGGCTGGCCTATGAAACATCAGAAGAGCGTGCTCAGTTCTTCAATCCTTCTGTGTTTATTTCTATCTACGCAATTATTGCTGTAGTTTCAGTTATTTTGATTGTTCTAAGATCCTACTCTTTCACGGTCCTTGGGTTAAAGACAGCACAGATATTCTTCTCTCAAATTCTCCACAGCATCTTGCATGCCCCCATGTCTTTCTTTGACACCACTCCATCCGGGAGAATTCGGAGCAGGGCATCAATGGATCAGACCAATGTTGATGTCGTTATCCCCTTGTTCCTCAATTTTGTGGTAACCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCGACAACTTTCTTGTTAATTCCTCTTGCTTGGTTAAACGTTTGGTACCGGGGTTATTTTCTTGCTTCCTCTCGTGAGTTAACTCGTCTGGATTCAATTACAAAAGCACCTGTCATTCACCATTTCTCTGAAAGCATTTCGGGAGTCATGACAATCCGCGCATTCAGAAAGCAGAAGCAGTTTTGCGGAGAAAACATTAAACGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGTTTGTCGCTCTCATATGGGTTATCCTTAAACGCCATGATGTTCTGGGCCATATACACTAGCTGTTCCATTGAAAACAAATTTGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCCTCTGAAGCAGCATGGAGAAACAAGGATCGTGTCCCTCCTCCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGACGAACAGGAAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGGCTGGTGGAACCAACAGGAGGAAAAATAATAATTGATGGCATTGAAATATCTATCTTGGGACTTCATGATCTAAGATCACGGTTTGGTATAATCCCTCAAGAGCCTGTCCTTTTTGAAGGAACAGTTCGAACTAACATTGATCCAACCGGACAATATACAGACGAAGAGATATGGAAGAGTTTGGAACGCTGTCAGCTAAAAGAAGCAGTGGCTTCCAAGCCAGAGAAACTTGACTCTTCAGTGGTTGATAATGGAGATAACTGGAGTGTTGGGCAGAGACAGTTGCTTTGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAGGGCCAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAATGACCTATAA 2985 0.4255 MRNPTLLVLLQLLQYPRPFGFRKSEFDWVSKLMHSICSIFIVLWSTPLLISTVTFGTALLLGVPLDAGTVFTTTSVFKILQEPIISFPQSMISLSQALVSLGRLDGYMSSTELLDDSVEREEGCGGRIAVQVRDGTFSWDDHGQLQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKISGKIQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRDCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTEIFKECVRGSLKGKTIILVTHQVDFLQNVVLIVVMRDGTIVQSGKYNDLLASGMDFSALVAAHETCMKLMEQGAVVPGXNLNKQMKSPKAASNNRETNGEINPLDQLKSDNEGSKLIKEEERETGKVSFHICKLYCTEAFGWWGIGGVIFLSVLWQASTVASDYWLAYETSEERAQFFNPSVFISIYAIIAVVSVILIVLRSYSFTVLGLKTAQIFFSQILHSILHAPMSFFDTTPSGRIRSRASMDQTNVDVVIPLFLNFVVTMYITVISIFIITCQNSWPTTFLLIPLAWLNVWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKQFCGENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNIIKPENVGLSLSYGLSLNAMMFWAIYTSCSIENKFVSVERIKQFTNIPSEAAWRNKDRVPPPNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIEISILGLHDLRSRFGIIPQEPVLFEGTVRTNIDPTGQYTDEEIWKSLERCQLKEAVASKPEKLDSSVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGRAKEFDSPANLVQRPSLFVALVQEYANRSNDL 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium431g00004 995 CDD ABCC_MRP_domain2 751 971 - -
Vium431g00004 995 Gene3D - 114 366 IPR027417 -
Vium431g00004 995 Pfam ABC transporter 770 918 IPR003439 GO:0005524
Vium431g00004 995 Gene3D ABC transporter type 1, transmembrane domain 399 734 IPR036640 GO:0005524|GO:0016020
Vium431g00004 995 CDD ABC_6TM_ABCC_D2 439 728 IPR044726 GO:0140359
Vium431g00004 995 FunFam ABC transporter C family member 3 736 987 - -
Vium431g00004 995 MobiDBLite consensus disorder prediction 376 395 - -
Vium431g00004 995 Gene3D ABC transporter type 1, transmembrane domain 22 113 IPR036640 GO:0005524|GO:0016020
Vium431g00004 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 351 IPR027417 -
Vium431g00004 995 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 21 989 - -
Vium431g00004 995 CDD ABCC_MRP_domain1 130 330 - -
Vium431g00004 995 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 753 987 IPR003439 GO:0005524
Vium431g00004 995 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 438 716 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00004 995 Pfam ABC transporter 148 281 IPR003439 GO:0005524
Vium431g00004 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 986 IPR027417 -
Vium431g00004 995 Gene3D - 736 986 IPR027417 -
Vium431g00004 995 FunFam ABC transporter C family member 4 113 371 - -
Vium431g00004 995 ProSitePatterns ABC transporters family signature. 255 269 IPR017871 GO:0005524|GO:0016887
Vium431g00004 995 FunFam ABC transporter C family member 5 399 734 - -
Vium431g00004 995 SMART AAA_5 157 338 IPR003593 GO:0016887
Vium431g00004 995 SMART AAA_5 779 963 IPR003593 GO:0016887
Vium431g00004 995 Pfam ABC transporter transmembrane region 461 689 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00004 995 SUPERFAMILY ABC transporter transmembrane region 433 733 IPR036640 GO:0005524|GO:0016020
Vium431g00004 995 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 130 353 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium431g00004 Vium-Chr431 131233 136877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium431g00004 751 977 Calmodulin-binding Proteins AT2G36910 30.435 1.29e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium431g00004 - K05666 vum:124839723 1925.21