Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium431g00003 ATGGAAATGGTACTTTCGTTTACAGTGGTTGATAATGGAGATAACTGGAGTGTTGGGCAGAGACAGTTGCTTTGTTTGGGAAGGGTTATGCTTAAGCAAAGTAGGTTGTTGTTTATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTGATTCAAAAGATCATCCGAGAGGACTTTGCAGCACGTACCATCATCAGCATTGCTCATAGAATACCAACAGTAATGGACTGCGATAGAATTCTAGTTGTGGACGCAGGGAGGGCCAAAGAATTTGACTCACCAGCCAACTTGGTCCAAAGGCCATCACTCTTTGTTGCTTTAGTTCAGGAGTATGCCAATCGCTCAAATGACCTATAA 366 0.4344 MEMVLSFTVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRILVVDAGRAKEFDSPANLVQRPSLFVALVQEYANRSNDL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium431g00003 121 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 11 115 - -
Vium431g00003 121 Pfam ABC transporter 10 44 IPR003439 GO:0005524
Vium431g00003 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 112 IPR027417 -
Vium431g00003 121 Gene3D - 1 120 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium431g00003 Vium-Chr431 126988 127651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium431g00003 9 103 Calmodulin-binding Proteins AT2G36910 31.579 1.75e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium431g00003 - K05666 vum:124839713 236.498