Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium431g00001 ATGTCGTTTGCAGCTTCAACGTGGCTCACGTCCCTCTCGTGTTCATTGGATGCAACTCCAAATCTTCCTCACTGGCTGAGATTCATTTTCCTCTCTCCATGCCCTCAGAGAGCTCTTTTGTCTGGTGTTGACGTTCTGCTTCTGTTGACACTCTTTGTGTTTGCGCTTGTAAAGCTCTATTCTAGGCTCACTTCCAATGCCAACGCTAACTCACACCTTGATAAACCACTTATCAGAAACAACAGAGTTTCTGTCAGGACAACAGCATGGTTTAAGCTAACTCTAACTGCAACCACTCTTTTGACATTATTGTACGCGGTGGCTTGCATTCTAGTGTTTGTCAGTTCCACCAACGAGCCCTGGAAGCAAACTGATGGCTTGTTTTGGTTACTTCAGGCCATAACACAACTAATCCTTATAGTCTTGATCGTCCATGAGAAAAGATTTGAAGCTGTTACTCACCCTTTGTCTCTCAGAATATACTGGATTGCAAATTTCATTGTGGTTTCTCTGTTCACTGCTTCTGGGATCATACGTTTGGTCTCTGTAGGAGTGGAAGATGGGAAACACTTCAGCTTCATGGTTGATGATACGGTTTCTTTCATTTCTTTACCCTTGTCACTTTTTCTGCTCTTTGTTGCAGTTAAAGGGTTCACCGGGATTGTGTCTGGCGAAGAAACAGAACCCCTTATTGACGAGGAAACAAAACTACATGAGAAATCCAACGTTACTGGCTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGATTTGGATAAACCCGTTGTTGAGCAAAGGGTACAAGTCACCTTTGAAGATTGATGAAATTCCATACCTTTCATCCCAGCATAGAGCTGAGAGGATGTCCGTTATCTTTGAATCAAAGTGGCCAAAATCAGATGAGAGGTCGAAGCACCCGGTTCGAACAACGTTGCTTCGCTGTTTCTGGAGGGAGATAGCCTTCACAGCATTTCTTGCTGTTATTAGGCTGTCTGTGATGTTCGTAGGGCCAGTTCTCATTCAAAGTTTTGTTGATTTTACATCAGGAAAAGGTAGCTCTGTGTATGAAGGATACTACCTCGTGTTGGTTCTCCTGTGTGCCAAATTTGTAGAAGTTTTGACAACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATCAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGCTGAGGCTAACGGGTTCCGCGAGGCAAGATCATGGTGTTGGGCCTATTGTCAATTACATGGCTGTTGATACCCAACAACTCTCTGATATGATGCTCCAGTTACACGCTGTGTGGATGATGCCATTTCAAGTTGGCATTGGTTTGTTTTTGCTCTACAATTGTCTGGGAGCCTCGGTGATTACGGCTACAATTGGACTTCTTGGTGTCATTGCATTTGCTGTGGTGGCTAATAGAAGAAACAAGCGTTTCCAGTTTAATGCCATGATGTGCCGTGACTCAAGGATGAAGGCAGTGAATGAGTTGCTTAATTACATGCGTGTCATCAAGTTCCAAGCATGGGAAGAACATTTCAATGGGAGAATTTTGGGTTTCCGCAAGTCTGAGTTTGAGTGGCTCTCCAAGTTTATGCAATCAATCTGTGGCGTTATTATTGTGTTGTGGAGCACCCCATTGTTGATATCAACTCTGACGTTTGGTACCGCGCTTTTGCTTGGAGTTCGACTTGATGCAGGCACGGTTTTCACCACCACAACTGTGTTTAAGATCCTGCAGGAACCTATTAGGACCTTTCCTCAGAGTATGATATCTCTTTCACAAGCGCTGGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGCAGGGAATTGTCGGATGATTCGGTTGAGAGAGAGGAAGGGTGTAGTGGACGCATTGCTGTGCAGGTCAGAGATGGAACTTTTAGCTGGGATGATGATGGTCAGCTGCAAGACTTGAAAAACATTAATTTGGAGATTAATAAGGGGGAGCTTACAGCAATTGTTGGGACTGTAGGGTCCGGGAAATCTTCACTCCTTGCTTCAATTCTTGGTGAGATGCACAAAAATTCTGGGAAGATTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACAATTGAGGAAAACATTCTCTTTGGCTTACCAATGAACAGGCAGAAGTACAATGAAGTGGTCAGAGTTTGTAGCTTGGAGAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGTCAGAAGCAGCGCATACAGCTTGCCAGGGCTGTATATCAAGATTCTGATATATATCTTCTTGATGATGTTTTCAGTGCTGTAGATGCACATACTGGCACTGATATATTCAAGGAATGTGTGAGGGGTTCTCTTAAAGGAAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAGGGATGGAGCGATAGTACAATCAGGGAAGTATGATGATCTACTTGCTTCTGGAATGGATTTTAGTGCTCTTGTTGCAGCACATGAGACATCTATGGAACTAGTGGAGCAAGGTGCGGTCGTGCCTGGGGAAAATCTGAATCAGCAAATAAAATCACCAAAGGCAGGTTCTAATAACAGACCAGCCAACGGTGAAAGCAATTCTCTTGACCAGCCCAAGTCTGACAATGAAGGTTCTAAACTCATCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTCGTATCTATAAACTCTACTGCACAGAGGCTTTCGGGTGGTGGGGCATTGGAGGAGTAATCCTTCTTTCTGTGTTGTGGCAAGCATCAATGATGGCTAGTGATTATTGGCTGGCTTATGAAACATCCGAAGAGCGTGCACAGTTCTTCAATCCTTCTACGTTTATTTCTATCTACGGAATTATTGCTGTAGTTTCAATTATTTTGATTGTGCTAAGATCCTACGCTGTTATGGTCCTCGGGTTAAAGACAGCACAGATTTTCTTCAATCAAATTCTCCACAGCATCTTGCATGCCCCCATGTCTTTCTTTGACACCACTCCATCCGGGAGAATTCTTAGCAGGGCATCCACTGATCAGACCAATGTTGATGTTTTTATCCCCTTGTTCCTCAATTTTGTGGTAGCCATGTACATTACAGTGATCAGCATCTTCATAATCACATGTCAAAATTCTTGGCCGACAGCTTTCTTGTTAGTTCCTCTTGCTTGGTTAAACATTTGGTACCGGGGTTATTTTCTTGCTTCCTCTCGTGAGTTAACTCGTCTGGATTCAATTACTAAAGCACCTGTCATTCACCATTTCTCTGAAAGCATTTCGGGGGTCATGACAATCCGGGCATTCAGAAAGCAGAAGCAGTTTTGCGGAGAAAACATTAAACGGGTGAATTCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCATAGTTTTTTGCTTCTCCGCCATGTTCATGATCATGTTACCCAGCAATATCATAAAGCCAGAGAATGTTGGCTTGTCGCTCTCATACGGGTTATCATTAAACGCCGTGATGTTTTGGGCCATATACATGAGCTGTTTCATTGAAAACAAATTGGTATCTGTTGAGAGGATCAAACAGTTCACAAATATTCCATCCGAAGCAACATGGAGAAACAAGGATCGTGTGCCTCCTGCAAATTGGCCCGGTCAAGGCAATGTTGATATCAAAGATTTGCAGGTTAGATATCGTCCAAACACCCCTTTGGTTCTTAAAGGCATCACCTTAAGCATCAATGGAGGAGAAAAAGTTGGTGTTGTTGGACGA 3879 0.4331 MSFAASTWLTSLSCSLDATPNLPHWLRFIFLSPCPQRALLSGVDVLLLLTLFVFALVKLYSRLTSNANANSHLDKPLIRNNRVSVRTTAWFKLTLTATTLLTLLYAVACILVFVSSTNEPWKQTDGLFWLLQAITQLILIVLIVHEKRFEAVTHPLSLRIYWIANFIVVSLFTASGIIRLVSVGVEDGKHFSFMVDDTVSFISLPLSLFLLFVAVKGFTGIVSGEETEPLIDEETKLHEKSNVTGFASASAISKAFWIWINPLLSKGYKSPLKIDEIPYLSSQHRAERMSVIFESKWPKSDERSKHPVRTTLLRCFWREIAFTAFLAVIRLSVMFVGPVLIQSFVDFTSGKGSSVYEGYYLVLVLLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLTGSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGASVITATIGLLGVIAFAVVANRRNKRFQFNAMMCRDSRMKAVNELLNYMRVIKFQAWEEHFNGRILGFRKSEFEWLSKFMQSICGVIIVLWSTPLLISTLTFGTALLLGVRLDAGTVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVEREEGCSGRIAVQVRDGTFSWDDDGQLQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHKNSGKIQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCSLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDVFSAVDAHTGTDIFKECVRGSLKGKTIILVTHQVDFLHNVDLIVVMRDGAIVQSGKYDDLLASGMDFSALVAAHETSMELVEQGAVVPGENLNQQIKSPKAGSNNRPANGESNSLDQPKSDNEGSKLIKEEERETGKVSFRIYKLYCTEAFGWWGIGGVILLSVLWQASMMASDYWLAYETSEERAQFFNPSTFISIYGIIAVVSIILIVLRSYAVMVLGLKTAQIFFNQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVVAMYITVISIFIITCQNSWPTAFLLVPLAWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKQFCGENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSIVFCFSAMFMIMLPSNIIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKLVSVERIKQFTNIPSEATWRNKDRVPPANWPGQGNVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGR 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium431g00001 1293 SUPERFAMILY ABC transporter transmembrane region 938 1238 IPR036640 GO:0005524|GO:0016020
Vium431g00001 1293 FunFam ABC transporter C family member 10 304 617 - -
Vium431g00001 1293 ProSitePatterns ABC transporters family signature. 760 774 IPR017871 GO:0005524|GO:0016887
Vium431g00001 1293 MobiDBLite consensus disorder prediction 880 913 - -
Vium431g00001 1293 Pfam ABC transporter 653 786 IPR003439 GO:0005524
Vium431g00001 1293 Pfam ABC transporter transmembrane region 945 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00001 1293 Pfam ABC transporter transmembrane region 322 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00001 1293 Gene3D - 613 872 IPR027417 -
Vium431g00001 1293 SMART AAA_5 662 835 IPR003593 GO:0016887
Vium431g00001 1293 FunFam ABC transporter C family member 4 618 876 - -
Vium431g00001 1293 Gene3D ABC transporter type 1, transmembrane domain 904 1239 IPR036640 GO:0005524|GO:0016020
Vium431g00001 1293 Gene3D ABC transporter type 1, transmembrane domain 306 612 IPR036640 GO:0005524|GO:0016020
Vium431g00001 1293 MobiDBLite consensus disorder prediction 880 906 - -
Vium431g00001 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1221 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00001 1293 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 635 858 IPR003439 GO:0005524
Vium431g00001 1293 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 247 1293 - -
Vium431g00001 1293 FunFam ABC transporter C family member 5 904 1239 - -
Vium431g00001 1293 CDD ABC_6TM_ABCC_D2 944 1233 IPR044726 GO:0140359
Vium431g00001 1293 Gene3D - 1241 1293 IPR027417 -
Vium431g00001 1293 CDD ABC_6TM_ABCC_D1 322 609 IPR044746 GO:0140359
Vium431g00001 1293 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 321 601 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium431g00001 1293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 856 IPR027417 -
Vium431g00001 1293 CDD ABCC_MRP_domain1 635 834 - -
Vium431g00001 1293 SUPERFAMILY ABC transporter transmembrane region 312 614 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium431g00001 Vium-Chr431 7 11638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium431g00001 632 851 Calmodulin-binding Proteins AT2G36910 30.508 1.43e-25 113