Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4319g00002 ATGGCATCCAAGGACCCAACACTTCTCAAACTCCACTCGGCACGCTCCGACCTCAAAACCCTCCTCCAAGCCTCATCGGAGGCACAGCACGACATCAAAGAAACCGAGAAAAGGTTTTCTCTCTACCAGCAATCTCTCTCAACCGCCTCCAGAAGAATCCTCCCTCTGCAGTCCCTAACCATGTCCAGAAAAGCCCTCGACGCCAGGATCACCAGAGCGGTTTCCCCGGCGGTGGAACTCCTCAACACGTTCAAGCGCACGGAGGCTCTTCAGGGTAAGCTCGTCACCTTCTCGGCCGAGCTGTCGTCGGAGAAGTCGCAGCATAGGAGGTTGGAGAAGCTGGTGGAATACGTGGGGTGCGTGGAAGAAGTGAAGGAAGGGATAGAGAACATATGCGACGAGGTGGAGACGGTGGTTCAGAGGCTGCAGGAGGTGGTGGAGTTTGTGAGCAGGACGAAGGCTGCGGATCAGGACAGGGACGTGAGGCTGAAGGATGCGTTGGTGACGCTGAAGGTGCTGTATGAAAGGGAGGTGGATGAGATGAGGTTTGAGGGGTTGTTGGATCAGGCGTTGCTCCATGTGCAGGATGAGTTTGAGGAACTGCTGTTGAGGATGAAGCACCGGAACATGAAGGATTTGGTGCACCAGCATGGTGGCGAAGAAAGGGAACTGGGGTCGGAGACGGAGGTTGAAGCCCTCAGAAGAATTTCAACCACCCTTGCTGCCAATGATTGCATGGACATTTGCATTGATATATACCTCAAGGCGAGATACAGAAGAGCTGCGAAGGCACTGATGAAGCTAAATCCCGATTACCTTCGAACGTACACCCCAGAAGGAATCGACGAAATGGAGTGGGAAACCTTAGAAACAGCCATAACCCTTTGGATTCAACACTTCGAAGTCGCAGTGAAGAAGGTGCTGTTTTCAGAAAAGAAACTCTGCGAGAGTGTCCTGGGCGATTTCATGGAGGGTCTAGTTTGGCCAGAATGCTTCATCAAAATCTCCGACAAGATCATGGCCGTGTTCTTCCGCTTCGGAGAAGGCGTGGCACGAAGCAGCAAAGAGCCCCAGAAGCTCTTCAAACTATTGGACATGTTTGAATCCCTAGAAAAACTCAAACCCCATATATCACAAATCTTCGAAGGAGAACCTGGCGCAGACATATGCACGCGGTTCCGTGAGTTGGAGAAGCTCATCATCGACGCCTCGAGCAAAGTCTTCTGGGAATTCGGACTCCAAATAGAAGGCAACATCGACGGTCTCCCCCCTCCGCAAGACGGTTCCGTTCCGAAGCTCGTACGTTACGCCATCAACTACCTCAAATACCTAACCGCGGCCAATTACAAAACATCCATGATCAAGGTTCTCCGAACACAACAAACGTGGAGAGGCAAAGATGGTAGTAGTAGTATTGAAACAAGTGGCAAGGAGACGTTAACGGACGAGGGTTTGTTGAAGCATGCGATTTCCAACGTGATGGAGGCGCTTCAGAGGAACGTAGAGTCAAAGAGAGTGTGTTGTAGGGACAAGGTGTTGGTGCATGTGTTCACGATGAACACCTATTGGTACATATACATGAGAACAAAGAACACGCAGCTTGGGGAGGTGTTGGGAGAGAAGCGTATGAAGGAGGAATACAAGGCTGTGGCGGAGGAATGCGCTTACTTGTATCAGAAGCAAGCATGGGGGTCTTTGGTGAAGGTTTTGGATGGTGAGGATGTGAGGGAGGAAGGGAAGGGGAGTGTGGGAAGAGTGGTGAGTGAAAAGGTTGAGACTTTCTTCAAGGGTTTGAACGAGGTATGTGATAGACATGCCAGAGGGGTGTATAGTATACCTGATGTTGATTTGAGGGAGCAGATGAGAGAGGCTACAGTGAGGCTTGTGGTGCCTGCATATGCAGAGTTTTTGGAATGTTATTCAGAGTTTTTGAATAAGAAAGGGTACCCCAGTGTTGAGAGGGTGAAAGGGTTGGTGGTGAAGGCTTTTGATGGAGGAAGGTTGAGGAGGAAGGGTTCTGCTTCTGGGTCATTGGAGAGAGATGTTGTTGTAAGAGATGTTTGA 2064 0.5053 MASKDPTLLKLHSARSDLKTLLQASSEAQHDIKETEKRFSLYQQSLSTASRRILPLQSLTMSRKALDARITRAVSPAVELLNTFKRTEALQGKLVTFSAELSSEKSQHRRLEKLVEYVGCVEEVKEGIENICDEVETVVQRLQEVVEFVSRTKAADQDRDVRLKDALVTLKVLYEREVDEMRFEGLLDQALLHVQDEFEELLLRMKHRNMKDLVHQHGGEERELGSETEVEALRRISTTLAANDCMDICIDIYLKARYRRAAKALMKLNPDYLRTYTPEGIDEMEWETLETAITLWIQHFEVAVKKVLFSEKKLCESVLGDFMEGLVWPECFIKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFESLEKLKPHISQIFEGEPGADICTRFRELEKLIIDASSKVFWEFGLQIEGNIDGLPPPQDGSVPKLVRYAINYLKYLTAANYKTSMIKVLRTQQTWRGKDGSSSIETSGKETLTDEGLLKHAISNVMEALQRNVESKRVCCRDKVLVHVFTMNTYWYIYMRTKNTQLGEVLGEKRMKEEYKAVAEECAYLYQKQAWGSLVKVLDGEDVREEGKGSVGRVVSEKVETFFKGLNEVCDRHARGVYSIPDVDLREQMREATVRLVVPAYAEFLECYSEFLNKKGYPSVERVKGLVVKAFDGGRLRRKGSASGSLERDVVVRDV 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4319g00002 687 Gene3D Exocyst complex component Exo70 162 670 - -
Vium4319g00002 687 SUPERFAMILY Cullin repeat-like 162 647 IPR016159 -
Vium4319g00002 687 Coils Coil 18 38 - -
Vium4319g00002 687 PANTHER EXOCYST COMPLEX PROTEIN EXO70 132 663 IPR004140 GO:0000145|GO:0006887
Vium4319g00002 687 Pfam Exo70 exocyst complex subunit 296 646 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4319g00002 Vium-Chr4319 12214 14821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4319g00002 5 651 EXO70 exocyst subunit family AT4G31540 28.979 3.74e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4319g00002 - - gmx:100778774 1054.66